Pass in Initial Glucose Concentration as a parameter for PatchProcessMetabolism

.github/config/checks.xml

@@ -58,7 +58,7 @@
         <property name="maximum" value="0" />
         <property name="message" value="Javadoc has trailing spaces." />
     </module>
-    
+
     <module name="TreeWalker">
         <!-- Checks for Javadoc comments -->
         <module name="InvalidJavadocPosition" />
@@ -122,7 +122,15 @@
         <module name="ParenPad" />
         <module name="TypecastParenPad" />
         <module name="WhitespaceAfter" />
-        <module name="WhitespaceAround" />
+        <module name="WhitespaceAround">
+            <property name="allowEmptyConstructors" value="true"/>
+            <property name="allowEmptyLambdas" value="true"/>
+            <property name="allowEmptyMethods" value="true"/>
+            <property name="allowEmptyTypes" value="true"/>
+            <property name="allowEmptyLoops" value="true"/>
+            <property name="allowEmptyCatches" value="true"/>
+            <property name="ignoreEnhancedForColon" value="false"/>
+        </module>
 
         <!-- Checks for modifiers -->
         <module name="ModifierOrder" />

.github/workflows/build.yml

@@ -11,10 +11,10 @@ jobs:
     - name: Checkout the repo
       uses: actions/checkout@v4
 
-    - name: Set up JDK 1.8
+    - name: Set up JDK 1.11
       uses: actions/setup-java@v3
       with:
-        java-version: '8'
+        java-version: '11'
         distribution: 'corretto'
 
     - name: Validate Gradle wrapper

.github/workflows/documentation.yml

@@ -14,10 +14,10 @@ jobs:
     - name: Checkout the repo
       uses: actions/checkout@v4
 
-    - name: Set up JDK 1.8
+    - name: Set up JDK 1.11
       uses: actions/setup-java@v3
       with:
-        java-version: '8'
+        java-version: '11'
         distribution: 'corretto'
 
     - name: Validate Gradle wrapper

build.gradle

@@ -2,10 +2,11 @@ plugins {
     id "java"
     id "jacoco"
     id "com.palantir.git-version" version "3.0.0"
+    id "com.diffplug.spotless" version "6.25.0"
 }
 
 version = "3.1.4"
-sourceCompatibility = 1.8
+sourceCompatibility = 1.11
 
 repositories {
     mavenCentral()
@@ -28,12 +29,17 @@ dependencies {
     implementation "com.formdev:flatlaf:0.36"
     implementation "com.google.code.gson:gson:2.8.6"
     runtimeOnly group: "javax.media", name: "jmf", version: "2.1.1e"
-    testImplementation "org.mockito:mockito-core:2.23.+"
-    testImplementation "org.mockito:mockito-inline:2.23.+"
-    testImplementation "junit:junit:4.12"
+    testImplementation "org.mockito:mockito-core:5.14.+"
+    testImplementation "org.mockito:mockito-inline:5.2.+"
+    testImplementation "org.junit.jupiter:junit-jupiter-api:5.11.2"
+    testImplementation "org.junit.jupiter:junit-jupiter-engine:5.11.2"
     testImplementation "commons-io:commons-io:2.8.0"
 }
 
+test {
+    useJUnitPlatform()
+}
+
 javadoc {
     source = sourceSets.main.allJava
     classpath = configurations.compileClasspath
@@ -61,6 +67,24 @@ jacocoTestReport {
     }
 }
 
+spotless {
+    java {
+        removeUnusedImports()
+        googleJavaFormat().aosp()
+                .reorderImports(true)
+                .formatJavadoc(true)
+        importOrder('java|javax|org|com||sim|ec|arcade.core|arcade|\\#java|\\#org|\\#|\\#arcade.core|\\#arcade')
+        indentWithSpaces()
+    }
+
+    format 'misc', {
+        target '**/.gitignore', '**/*.gradle', '**/*.md', 'src/**/*.xml', 'test/**/*.xml'
+        indentWithSpaces()
+        trimTrailingWhitespace()
+        endWithNewline()
+    }
+}
+
 jar {
     from { configurations.runtimeClasspath.collect { it.isDirectory() ? it : zipTree(it) } }
     duplicatesStrategy = DuplicatesStrategy.INCLUDE

settings.gradle

@@ -1 +1 @@
-rootProject.name = 'arcade'
+rootProject.name = 'arcade'