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@bihealth

Berlin Institute of Health

BIH Core Unit Bioinformatics & BIH HPC IT

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  1. sodar-server sodar-server Public

    SODAR: System for Omics Data Access and Retrieval

    Python 16 3

  2. sodar-core sodar-core Public

    SODAR Core: A Django-based framework for building scientific data management web apps

    Python 9 1

  3. scelvis scelvis Public

    🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

    Python 21 5

  4. digestiflow-server digestiflow-server Public

    🍸 Web-based database system for flow cell management (incl. REST API)

    Python 15 3

  5. altamisa altamisa Public

    AltamISA: a Python API for ISA-Tab files

    Python 5 2

Repositories

Showing 10 of 175 repositories
  • nf-core-configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    bihealth/nf-core-configs’s past year of commit activity
    Nextflow 0 MIT 289 0 1 Updated Feb 25, 2025
  • cubi-tk Public

    CUBI Tooling for SODAR, VarFish et al.

    bihealth/cubi-tk’s past year of commit activity
    Python 5 MIT 5 39 1 Updated Feb 24, 2025
  • dotty Public

    cdot-based transcript projections

    bihealth/dotty’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 24, 2025
  • snappy-pipeline Public

    SNAPPY Nucleic Acid Processing in Python

    bihealth/snappy-pipeline’s past year of commit activity
    Python 10 MIT 4 116 (2 issues need help) 21 Updated Feb 24, 2025
  • sodar-server Public

    SODAR: System for Omics Data Access and Retrieval

    bihealth/sodar-server’s past year of commit activity
    Python 16 MIT 3 343 (6 issues need help) 0 Updated Feb 24, 2025
  • StemCNV-check Public
    bihealth/StemCNV-check’s past year of commit activity
    R 0 MIT 0 4 0 Updated Feb 24, 2025
  • reev Public

    REEV: Explanation and Evaluation of Variants

    bihealth/reev’s past year of commit activity
    TypeScript 9 MIT 4 39 7 Updated Feb 24, 2025
  • sodar-docker-compose Public

    Setup SODAR using Docker Compose

    bihealth/sodar-docker-compose’s past year of commit activity
    Shell 3 MIT 3 13 1 Updated Feb 21, 2025
  • sssd-docker Public

    Dockerized SSSD for dockerized iRODS deployments

    bihealth/sssd-docker’s past year of commit activity
    Shell 0 MIT 0 3 0 Updated Feb 21, 2025
  • sodar-cli Public

    SODAR REST API client (CLI + Python package)

    bihealth/sodar-cli’s past year of commit activity
    Python 1 MIT 1 6 3 Updated Feb 21, 2025
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