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Note limited meaning of box in assembly #896

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Merged
padix-key merged 1 commit into from
May 16, 2026
Merged

Note limited meaning of box in assembly #896

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3 changes: 3 additions & 0 deletions .gitignore
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Expand Up @@ -59,6 +59,9 @@ biotite.egg-info
*.code-workspace
.vscode/*

# Ignore Zed project files
.zed/*

# Ignore hidden OS related files
*.fuse_hidden*
.DS_Store
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5 changes: 5 additions & 0 deletions src/biotite/structure/io/pdb/convert.py
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Expand Up @@ -223,6 +223,11 @@ def get_assembly(
Contains the `sym_id` annotation, which enumerates the copies of the asymmetric
unit in the assembly.

Notes
-----
The ``box`` attribute of the :class:`AtomArray`/:class:`AtomArrayStack` returned by
this function has limited meaning, as the assembly is not tied to the unit cell.

Examples
--------

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5 changes: 5 additions & 0 deletions src/biotite/structure/io/pdb/file.py
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Expand Up @@ -869,6 +869,11 @@ def get_assembly(
Contains the `sym_id` annotation, which enumerates the copies of the
asymmetric unit in the assembly.

Notes
-----
The ``box`` attribute of the :class:`AtomArray`/:class:`AtomArrayStack` returned by
this function has limited meaning, as the assembly is not tied to the unit cell.

Examples
--------

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5 changes: 5 additions & 0 deletions src/biotite/structure/io/pdbx/convert.py
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Expand Up @@ -1706,6 +1706,11 @@ def get_assembly(
Contains the `sym_id` annotation, which enumerates the copies of the asymmetric
unit in the assembly.

Notes
-----
The ``box`` attribute of the :class:`AtomArray`/:class:`AtomArrayStack` returned by
this function has limited meaning, as the assembly is not tied to the unit cell.

Examples
--------

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