ENH: add core_nt Kraken 2 DB to the list of allowed databases (#228)

bokulich-lab · Jan 18, 2025 · 9a69cb6 · 9a69cb6
1 parent 64e52e2
commit 9a69cb6
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/q2_annotate/kraken2/database.py b/q2_annotate/kraken2/database.py
@@ -42,6 +42,7 @@
     "pluspfp16": "pluspfp_16gb",
     "eupathdb": "eupathdb48",
     "nt": "nt",
+    "corent": "core_nt",
     "greengenes": "Greengenes13.5",
     "rdp": "RDP11.5",
     "silva132": "Silva132",

diff --git a/q2_annotate/plugin_setup.py b/q2_annotate/plugin_setup.py
@@ -334,10 +334,10 @@
     },
     parameters={
         'collection': Str % Choices(
-            ['viral', 'minusb', 'standard', 'standard8',
-             'standard16', 'pluspf', 'pluspf8', 'pluspf16',
-             'pluspfp', 'pluspfp8', 'pluspfp16', 'eupathdb',
-             'nt', 'greengenes', 'rdp', 'silva132', 'silva138'],
+            ['viral', 'minusb', 'standard', 'standard8', 'standard16',
+             'pluspf', 'pluspf8', 'pluspf16', 'pluspfp', 'pluspfp8',
+             'pluspfp16', 'eupathdb', 'nt', 'corent', 'greengenes',
+             'rdp', 'silva132', 'silva138'],
         ),
         'threads': Int % Range(1, None),
         'kmer_len': Int % Range(1, None),