Correctly identify bundled files in upload wizard (SCP-5941)

[bistline]

BACKGROUND & CHANGES

This fixes a bug in the upload wizard where bundled sequence index files were not correctly identified. The parent files was instead being supplied to the index form as it was matching on the study_file_bundle_id first before finding the index file. Now, an added check to ignore the file by its ID allows the index to be found. This appears to have affect BAM files as well, but given their sparsity in SCP it wasn't identified until now due to the fragment BED file work.

MANUAL TEST

1. Boot as normal and load the upload wizard for any study that has BED or BAM files
2. Confirm the index file is correct for the parent sequence file

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 70.63%. Comparing base (734ccf9) to head (b06b7ef).
Report is 12 commits behind head on development.

Additional details and impacted files

@@               Coverage Diff               @@
##           development    #2222      +/-   ##
===============================================
+ Coverage        70.51%   70.63%   +0.12%     
===============================================
  Files              332      331       -1     
  Lines            28493    28292     -201     
  Branches          2518     2464      -54     
===============================================
- Hits             20092    19985     -107     
+ Misses            8254     8160      -94     
  Partials           147      147              

Files with missing lines	Coverage Δ
app/javascript/components/upload/upload-utils.js	91.21% <100.00%> (ø)
test/js/upload-wizard/file-info-responses.js	100.00% <100.00%> (ø)

... and 66 files with indirect coverage changes

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[jlchang]

Functional review - Sequence file form now displays index file name as expected (thanks for figuring out my vite issue @bistline!)