This repository contains data and pipelines necessary to create the figures for the Madagascar bat kobuvirus paper
Sub-directories within this repo contain pipeline directions and are split as such:
- Pipelines directory: Contains necessary code and raw input data to curate results
- Results directory: Contains intermediary results created from the pipelines directory to show that everything worked
- Figures directory: Contains R code and data needed to create the final versions of the figures for the paper
- Supplemental directory: Contains some supplementary scripts needed to create supplemental data
This workflow broadly followed the Brook lab's Mada-Bat-CoV pipeline
The preprint can be found here