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Fixing peek params for non-cgat-flow repositories #103

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Fixing peek params for non-cgat-flow repositories #103

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d02ed73
peek_params was using pipeline directory when config was run, irrespe…
Oct 24, 2019
71b5a34
Merge branch 'master' into {BHWE}_fix_peek_params_for_config
IanSudbery May 16, 2020
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2 changes: 1 addition & 1 deletion cgatcore/pipeline/control.py
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Original file line number Diff line number Diff line change
Expand Up @@ -340,7 +340,7 @@ def peek_parameters(workingdir,
# patch for the "config" target - use default
# pipeline directory if directory is not specified
# working dir is set to "?!"
if ("config" in sys.argv or "check" in sys.argv or "clone" in sys.argv and workingdir == "?!"):
if (("config" in sys.argv or "check" in sys.argv or "clone" in sys.argv) and workingdir == "?!"):
workingdir = os.path.join(get_params()["pipelinedir"],
"pipeline_" + pipeline)

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