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Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Arctic Code Vault Contributor

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chris-a-talbot/README.md

Hey, I'm Chris

PhD Student in Computational Biology @ Cornell | NSF Graduate Research Fellow

I develop bioinformatics tools and do research in Philipp Messer's lab. I'm interested in spatiotemporal patterns of genetic diversity. I contribute to the SLiM ecosystem, and I build software that helps scientists and educators work more effectively.

Website

Population Genetics Tools

  • 🌱 SLiM — Open-Source Contributor - Forward-time population genetic and evolutionary ecology simulation framework.
    🌐 messerlab.org/slim · 📄 10.1093/molbev/msaf313
  • 🌱 slim-vscode-tools — Open-Source Contributor - VS Code extension & LSP for SLiM.
  • ARGscape — Lead Developer - Web application for visualizing and analyzing tree sequences.
    🌐 argscape.com · 📄 arXiv:2510.07255
  • fastgaia — Lead Developer - Fast ancestral location inference from ARGs.
  • gaiapy — Lead Developer - Python implementation of the GAIA spatial inference algorithms (Grundler et al., 2025).

Other Tools for Scientists & Educators

  • pubsync - Lead Develper — Publication aggregator and embeddable widget for academic websites.
  • Anstett Lab Website — Lead Developer - Lab website for Dr. Daniel Anstett at Cornell.
  • Cayuga Keep — Lead Developer - Volunteer and data management system for Discover Cayuga Lake.

Python TypeScript React FastAPI R C++

Pinned Loading

  1. argscape argscape Public

    Easy-to-use interactive tools for spatiotemporal ancestral recombination graph analysis

    HTML 5

  2. MesserLab/SLiM MesserLab/SLiM Public

    SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…

    C++ 207 36

  3. slim-community/slim-vscode-tools slim-community/slim-vscode-tools Public

    vscode extension for working with SLiM

    HTML 9 1

  4. gaiapy gaiapy Public

    A Python implementation of the "GAIA" R package by Michael Grundler

    Python 1

  5. AnstettLabWebsite AnstettLabWebsite Public

    Lab website prototype for Dr. Daniel Anstett at Cornell

    CSS

  6. chris-a-talbot.github.io chris-a-talbot.github.io Public

    Personal website with CV

    Svelte