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- restore supertile-reordered tile embeddings to coordinate order after forward pass (single-GPU and multi-GPU paths both go through _compute_tile_embeddings_for_slide which now applies argsort inverse) - cap num_workers and num_preprocessing_workers to SLURM-allocated CPUs in ExecutionOptions.__post_init__ (checks SLURM_CPUS_PER_TASK, SLURM_CPUS_ON_NODE, SLURM_JOB_CPUS_PER_NODE); same env vars added to _slurm_cpu_limit() in inference.py - drop legacy cfg.speed.num_workers fallback in ExecutionOptions.from_config; fix log message to say num_dataloader_workers instead of num_workers - add suppress_c_stderr context manager in log_utils and wrap wholeslidedata imports to silence ASAP spdlog noise at import time - bump hs2p minimum to 2.5.0 in all three locations (setup.cfg x2, requirements.txt); move PyTurboJPEG to base deps - add tile-level embedding ground-truth fixture and assertion in test_output_consistency; add scripts/generate_gt.py to regenerate fixtures Co-Authored-By: Claude Sonnet 4.6 <[email protected]>
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