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Revise the documentation to CodeMeta v3 #51

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Most of the links/snippets in https://codemeta.github.io/ still use CodeMeta v2 context file.

This MR:

  • replaces https://doi.org/10.5063/schema/codemeta-2.0 by https://w3id.org/codemeta/3.0
  • replaces codemeta.json v2 (codemetar) to codemeta.json v3 file (from Institut Pasteur)
  • updates the tools table to include which version(s) of CodeMeta is used/supported

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