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Pointer to BIDSonym and pydeface
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yarikoptic committed Oct 19, 2018
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -14,6 +14,10 @@ TODO Summary
### Removed
### Security

## [0.2.4] - 2018-10-19
### Added
- Pointer to BIDSonym and pydeface

## [0.2.3] - 2018-09-07
### Fixed
- Fix to Arizona consent form URL
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9 changes: 7 additions & 2 deletions docs/source/anon_tools.rst
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Expand Up @@ -43,12 +43,18 @@ leaving skull, which might be important for some types of analysis.
Usually achieved through alignment of pre-crafted mask to the subject
anatomy and removing of the masked out regions.

- `BIDSonym <https://github.com/PeerHerholz/BIDSonym>`_ - a BIDS app interfacing a
number of methods (`pydeface`_, `quickshear`_, `mri_deface`_) listed below
- `mri_deface <https://surfer.nmr.mgh.harvard.edu/fswiki/mri_deface>`_
from `FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`_ (`paper from
2007 with overview <http://onlinelibrary.wiley.com/doi/10.1002/hbm.20312/full>`_)
- https://github.com/poldrack/openfmri/blob/master/pipeline/facemask/deface.py
- `pydeface <https://github.com/poldracklab/pydeface>`_ (and former
`deface
<https://github.com/poldrack/openfmri/blob/master/pipeline/facemask/deface.py>`_ pipeline)
- https://github.com/hanke/gumpdata/blob/master/scripts/conversion/convert_dicoms_anatomy#L26
- https://github.com/hanke/mridefacer
- `quickshear <https://github.com/nipy/quickshear/>`_


Rendering faces unrecognizable
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Expand All @@ -58,5 +64,4 @@ facial features in the anatomical images:

- `Obscuring Surface Anatomy in Volumetric Imaging Data <http://link.springer.com/article/10.1007%2Fs12021-012-9160-3>`_
Used for HCP data
- `QuickShear <https://github.com/nipy/quickshear/>`_

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