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23 changes: 0 additions & 23 deletions doc/admin.md

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89 changes: 0 additions & 89 deletions doc/code_and_data_management.md

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6 changes: 1 addition & 5 deletions doc/contributing.md
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# CONTRIBUTING
# Contributing

This is a common effort, please contribute actively to this docs.
If something is unclear, incorrect, or incomplete; if something needs to be updated or if you found a new and cool feature, consider adding it yourself.
Expand All @@ -20,9 +20,7 @@ If you're new to markdown, here's a quick [markdown cheatsheet](https://www.mark

Before making any modification, remember that this guide is publicly accessible by anyone. If you want to add any potentially sensitive information (e.g. participants codes, passwords of shared accounts), consider making a private password-protected document that can be linked via the lab guide. If you're unsure about what to do or how to do, get in touch with the maintainers of the guide.


### Edit from github

1. Browse the repo to find the the markdown file you want to edit (e.g. the one for this section is [contributing.md](https://github.com/cpp-lln-lab/CPP_HPC/blob/main/doc/contributing.md)) and click on `edit` (the pen icon) on the top right
2. Edit the file with your changes
3. When done, click on `commit changes` (green botton on the top right), select `Create a new branch for this commit and start a Pull Request`, and then `Commit changes`
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To change the website structure (add, reorder, rename sections), see the file `mkdocs.yml` and the section `Pages`.


### Edit locally

If you're unfamiliar with the terms used here, check out the [git cheatsheet](https://training.github.com/downloads/github-git-cheat-sheet/)

1. fork this repository
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# CPP Lab Guide

Can you read me?
Welcome to the Crossmodal Perception and Plasticity (CPP) Lab!


## FAQ

What is the meaning of life? 42
Here's a few common questions that can help you use this guide. [WIP]

### How to navigate this guide?
The guide is divided in three main sections:

1. Welcome - mostly for newcomers to get acquainted to the lab and the place
2. Life in the lab - for daily problems that are not related to the research
3. Research - for sciency stuff and for tips about science outreach

If you are starting in the lab, we reccommend to check out sections 1 and 2 first, to get a hang of what you need to kick-start your time in the lab.
If you have a specific question, the subsections will help you find your answer.

### Why is it mostly empty?
The whole guide is a work in progress. It started from a old obsolete gdoc file and we are now trying to imporve it and expand it.

### There is an empty section that I urgently need. What do I do?
To get your answer in quickly, it's better to contact lab members directly as the guide may take a bit of time to have all the information. Once you find your answer, please get in touch to contribute it to the guide, so the next person will not have your same problem.

### There is an empty section that I could fill with information. How do I do?
Check out how to contribute below.


## Contributing

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# Using the computer cluster
# Cluster Computer

## General information

## How to set up

## Common practices

If you used the CECI (UCL cluster) for your project, mention it like this in the acknowledge section of your paper:

> “Computational resources have been provided by the supercomputing facilities of the Université catholique de Louvain (CISM/UCL) and the Consortium des Équipements de Calcul Intensif en Fédération Wallonie Bruxelles (CÉCI) funded by the Fond de la Recherche Scientifique de Belgique (F.R.S.-FNRS) under convention 2.5020.11 and by the Walloon Region”
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# Computing resources

## General information

## iMACs

## Monster computer

## Cluster
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# iMACs available in the lab

## General information
There are currently (update: July 2024) 4 iMacs in the lab.
If you want information about a computer or iMac in the lab, please consult this [google sheet](https://docs.google.com/spreadsheets/d/1U5_rjj5mzXzh_8bLA_Rx3FmDdpYIUx2Y_z8SJPnKTHg/edit?usp=sharing).

## How to set up


## Common practices
It is good practice to create your own account on the computer in order not to install on the same account a different version of Matlab Tools.

All iMacs have an **admin** account. See the google sheet above for the passwords.
All iMacs have an **admin** account. See the google sheet above for the passwords.
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# Monster computer

## General information

## How to set up

## Common practices
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# Classes
Some of the courses available can be found here:
# Doctoral schools

* [Thematic Doctoral School (EDT) in PSYChological Sciences and EDUCATIONation](https://uclouvain.be/fr/facultes/psp/psyceduc.html)

## Biomedical school

The statistics unit also provides some courses:

* [training courses in multiple statistical methods](https://sites.uclouvain.be/training/smcs/index.php?page=services&spage=formation&l=fr)
## Psychology school


## Particular cases (e.g. global partnership, interdisciplinary PhDs, ...)


## Classes
Some of the courses available can be found here:
* [Thematic Doctoral School (EDT) in PSYChological Sciences and EDUCATIONation](https://uclouvain.be/fr/facultes/psp/psyceduc.html)

The statistics unit also provides some courses:
* [training courses in multiple statistical methods](https://sites.uclouvain.be/training/smcs/index.php?page=services&spage=formation&l=fr)

Before enrolling in a course, you might want to double-check the prerequisites for the courses/credits with your doctoral school and the person of reference (for Psychological Sciences: Martine Janssens, for Biomedical School: Sandrin Wollanders).

**Careful**: some courses have a limit for attendance and you might want to enrol in time.

## Credits

## Credits

you can find English-version forms for annual meetings, mid-term evaluation and credit validation [here](https://uclouvain.be/en/faculties/psp/formulaires-informations-pratiques.html).


## Defending the PhD (IPSY rules)


Each doctoral student in IPSY has a thesis budget to cover some of the expenses (according to certain rules).

### Rules as of June 2023:


There is indeed an envelope of 881 € per PhD student which will be distributed/used as follows:

* 250 €: Maximum lump sum paid by the faculty for printing. This amount has been calculated to cover the printing of copies for a jury. No expenses above this budget will be reimbursed by the faculty. You can choose where to print. For instance, for approx. 200 pages, with 30 in colours, CIACO charges 35 EUR per copy. FACOPY 17 EUR.

* 150 €: Maximum amount for the organisation of the drink after the public defence. You can buy your own drinks/chips or ask Siegrid to take care of it.


No expenses above this budget will be reimbursed by the faculty.

Any balance will be paid by the doctoral student;


The balance of the "thesis" budget can be used for :
Any balance will be paid by the doctoral student.
The balance of the "thesis" budget can be used for:

* Possible travel of jury members

* reservation of train, plane, hotel, etc.

* printing the draft thesis, sending the thesis to the jury members, etc.

The doctoral student must pay particular attention to the following guidelines:
### Practical organisation: travel of a jury member, travel, etc.

#### Practical organisation: travel of a jury member, travel, etc.
* The IPSY Secretary

### Budget, reimbursements, balance and amounts available
#### Budget, reimbursements, balance and amounts available
* The CLC IPSY manager, my colleague Mr Achraf TSSICHE

### Format, layout, etc.
#### Format, layout, etc.
* The IPSY Editorial Assistant, my colleague Marianne BOURGUIGNON [email protected]

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