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@d3b-center

D3b

Center for Data Driven Discovery in Biomedicine at the Children's Hospital of Philadelphia

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  1. bixtools bixtools Public

    🐳 Dockerfiles for bioinformatics tools

    Dockerfile 16 4

  2. d3b-cli-igor d3b-cli-igor Public

    All-purpose CLI tool for D3b Center and partner orgs

    Python

Repositories

Showing 10 of 141 repositories
  • bixtools Public

    🐳 Dockerfiles for bioinformatics tools

    d3b-center/bixtools’s past year of commit activity
    Dockerfile 16 4 0 2 Updated Mar 12, 2025
  • nextflow-pilot Public
    d3b-center/nextflow-pilot’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 11, 2025
  • fw-prov-gigapath-extract-tile-embeds Public

    Flywheel gear to extract tile embeddings using pretrained Prov-Gigapath model (H&E slides)

    d3b-center/fw-prov-gigapath-extract-tile-embeds’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 7, 2025
  • OpenPedCan-analysis Public Forked from AlexsLemonade/OpenPBTA-analysis

    The analysis repository for the Open Pediatric Cancer Project

    d3b-center/OpenPedCan-analysis’s past year of commit activity
    HTML 21 84 2 0 Updated Feb 28, 2025
  • d3b-dff-cli Public

    the command line tool code base for d3b data file foundation

    d3b-center/d3b-dff-cli’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Feb 27, 2025
  • peds-brain-auto-skull-strip Public

    Docker for automated skull stripping for pediatric brain tumor subjects

    d3b-center/peds-brain-auto-skull-strip’s past year of commit activity
    0 0 0 0 Updated Feb 26, 2025
  • peds-brain-auto-seg-public Public

    D3b PedsBrainAutoSeg tool (public realease)

    d3b-center/peds-brain-auto-seg-public’s past year of commit activity
    7 0 0 0 Updated Feb 26, 2025
  • peds-brain-seg-pipeline-public Public

    Preprocessing and automatic tumor segmentation for pediatric brain tumor subjects

    d3b-center/peds-brain-seg-pipeline-public’s past year of commit activity
    4 1 0 0 Updated Feb 26, 2025
  • d3b-warehouse-redcap Public

    🏭 D3b Warehouse Pipeline for REDCap

    d3b-center/d3b-warehouse-redcap’s past year of commit activity
    Python 0 0 1 0 Updated Feb 25, 2025
  • image-deid-etl Public

    A WIP tool to assist with reading DICOM images from Orthanc, conversion to anonymized NIfTI images, and uploading to Flywheel.

    d3b-center/image-deid-etl’s past year of commit activity
    Python 4 Apache-2.0 0 22 0 Updated Jan 24, 2025
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