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\begin{document}

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\begin{tabular*}{\textwidth}{l @{\extracolsep{\fill}} r}
\multirow{2}{*}{\namestyle Dan F. DeBlasio, PhD } &  dan@dandeblasio.com\\
				& http://dandeblasio.com\\
\end{tabular*}

\small


\section*{Education}

\subparagraph{Doctor of Philosophy, Computer Science}
University of Arizona \bigdot Tucson, AZ \bigdot 2016
\begin{itemize}
    \item Advisor: John Kececioglu.
    \item Dissertation: ``Parameter Advising for Multiple Sequence Alignment''
    \item Minor: Ecology and Evolutionary Biology
\end{itemize}

\subparagraph{Master of Science, Computer Science}
University of Central Florida \bigdot Orlando, FL \bigdot 2009
\begin{itemize}
   \item Advisor: Shaojie Zhang
    \item Thesis: ``New Computational Approaches to Multiple RNA Alignment and RNA Search''
\end{itemize}

\subparagraph{Bachelor of Science, Computer Science}
University of Central Florida \bigdot Orlando, FL \bigdot 2007





\section*{Professional Experience}


\subparagraph{Assistant Teaching Professor}
Carnegie Mellon University \bigdot Pittsburgh, PA \bigdot 08/2023--present
\begin{itemize}
    \item Computational Biology Department, School of Computer Science
\end{itemize}


\subparagraph{Assistant Professor}
University of Texas at El Paso \bigdot El Paso, TX \bigdot 08/2019--07/2023
\begin{itemize}
	\item Department of Computer Science, College of Engineering
\end{itemize}


\subparagraph{Lane Fellow}
Carnegie Mellon University \bigdot Pittsburgh, PA \bigdot 9/2016--08/2019
\begin{itemize}
    \item Computational Biology Department, School of Computer Science
    \item Advisor: Carl Kingsford
\end{itemize}

\subparagraph{Graduate Research Assistant}
University of Arizona \bigdot Tucson, AZ \bigdot 8/2010--6/2016 
\begin{itemize}
    \item Fellow of the NSF IGERT in Comparative Genomics Grant DGE-0654435 (2010-2013)
    \item Funded under NSF Grant IIS-1217886 (2013-2016)
\end{itemize}

\subparagraph{Research Associate II}
Sanford-Burnham Institute for Medical Research \bigdot Orlando, FL \bigdot 5/2010--8/2010 
%\begin{itemize}
%    \item Software development and data analysis of RNA-Seq and Chip-Seq experiments related to melanoma classification.
%\end{itemize}

\subparagraph{Graduate Research Assistant}
University of Central Florida \bigdot Orlando, FL \bigdot 8/2007--8/2010 
\begin{itemize}
    \item Department of Engineering Technology, College of Engineering and Computer Science
%    \item Project was to interface with local law enforcement to improve communication
\end{itemize}

\subparagraph{Developer}
Cloudspace \bigdot Orlando, FL \bigdot 8/2005--8/2007 
%\begin{itemize}
%    \item Develop and maintain web-based applications 
%    \item Worked on both server side and client facing development
%\end{itemize}


\section*{Mentorship}
\subsection*{CMU}
\hspace{1.5em}\textbf{Fiyinfoluwa Gbosibo} May--July 2017, Summer Intern at CMU
\begin{itemize}
\item Best Student Paper Award, ACM-BCB 2019
\item Last known position: Senior Data Scientist at Visa
\end{itemize}

\textbf{Kwanho Kim} September 2017--May 2019, MSCB at CMU
\begin{itemize}
\item Thesis: Analyzing the Influence of Assessment Metrics on Automated Transcript Assembly Parameter Selection
\item Last known position: Associate Computational Biologist at the Broad Institute 
\end{itemize}

\subsection*{UTEP}
\hspace{1.5em}\textbf{Md. Easin Hasan} December 2019--October 2021, MS Bioinformatics, PhD Data Science at UTEP

\textbf{Hector Richart Ruiz} November 2019--May 2022, BS Computer Science at UTEP
\begin{itemize}
\item Last known position: Programmer at Columbus Industries
\end{itemize}

\textbf{Demetrius Hernandez} August 2021--December 2022, BS Computer Science at UTEP
\begin{itemize}
\item Best Student Poster Presentation, UTEP COURI Symposium, Spring 2022 
\item Last known position: PhD student at Notre Dame
\end{itemize}

\textbf{Marissa Stephens} August 2021--December 2021, Googler in Residence at UTEP

\textbf{Taposh Kumer Sarker} June 2022--May 2023, PhD Computer Science at UTEP

\textbf{Kevin Acosta} January 2023--December 2023, BS Computer Science at UTEP
\begin{itemize}
\item Last known position: MS Computer Science at UTEP
\end{itemize}

\textit{\textbf{Luis Cedillo} November 2021--Present, BS Computer Science at UTEP}




\section*{Teaching Experience}


\subparagraph{Instructor}  Carnegie Mellon University \bigdot Pittsburgh, PA
\begin{itemize}
    \item Introduction to Computational Biology (02-250), Spring 2024
    \item Algorithms and Advanced Data Structures (02-613/15-351/15-650), Spring 2024\footnotemark[1]
    \item Essentials of Mathematics and Statistics (02-680), Fall 2023\footnotemark[1], 2024
    \item Professional Issues for Computational and Automated Sciences (02-602/03-604), Fall 2023\footnotemark[1], 2024\footnotemark[1]
    \item Advanced Topics in Computational Genomics (02-715), Spring 2018\footnotemark[1]
 \end{itemize}
 \footnotetext[1]{Co-intruction}

\subparagraph{Instructor}  University of Texas at El Paso, El Paso, TX
\begin{itemize}
	\item Discrete Structures 1/2 (CS 2101/2202), Spring 2023.
	\item Machine Learning (CS 4361/5361/6361), Fall 2022.
	\item Elementary Data Structures (CS 2401), Spring, Fall 2020, Fall 2021, Fall 2022 (with Googler in Residence F21).
	\item Algorithmic Foundations of Computational Biology (CS 4390/5390), Fall 2019.
	\item Algorithms for Computational Biology (CS 4364/5364), Spring 2021, 2022.
\end{itemize}


\subparagraph{Instructor} University of Arizona \bigdot Tucson, AZ
\begin{itemize}
    \item Evolutionary and Functional Genomics Lab (ECOL 553L), Fall 2012.
\end{itemize}

\subparagraph{Teaching Assistant}
University of Arizona \bigdot Tucson, AZ
\begin{itemize}
    \item Evolutionary and Functional Genomics (ECOL 553), Fall 2012.
\end{itemize}

\subparagraph{Teaching Assistant}
University of Central Florida \bigdot Orlando, FL
\begin{itemize}
    \item Burnett Honors College Summer Institute (high school programming summer camp), Summer 2008.
    \item Burnett Honors College Summer Institute (high school programming summer camp), Summer 2007.
    \item Introduction to C Programming, Fall 2006
\end{itemize}

\section*{Internal Service and Leadership Activities}
\subsection*{CMU}
  \begin{itemize}
    \item \textbf{Coordinator}, Undergraduate Research, 2024--present
    \item \textbf{(Founding) Director}, Integrated MS in Computational Biology, 2024--present
    \item \textbf{Co-Assistant Director}, Masters in Computational Biology (joint with Biological Sciences), 2023---present
    \item \textbf{Department Representative}, Disability Services, 2023--present
  \end{itemize}
\subsection*{UTEP}
  \begin{itemize}
    \item \textbf{Mentor}, NSF Research Experience for Teachers, 2023
    \item \textbf{Member}, Faculty Hiring Committee, 2021--2022
    \item \textbf{Member}, Fundamentals Course Committee, 2020-2023 (\textbf{Chair}, 2022--2023)
    
  \end{itemize}

\section*{Grants and Funding}
\paragraph{National Science Foundation}  \hangindent=2em--- 
	\textit{Travel: NSF Student Travel Grant for 2024 Great Lakes Bioinformatics Conference (GLBIO)} ---
	Role: PI --- Amount Awarded: \$10,000 (May 2024)

\paragraph{Department of Defense though the Universities Space Research Association}   \hangindent=2em --- 
	\textit{Innovative Analysis of Spectro-Temporal Signatures using Machine Learning for Ground-Based Remote Sensing of Unresolved Space Objects} --- 
	Role: Co-I (Velez-Reyes, PI) --- Amount awarded: \$350,000 (May 2022-September 2024)

\paragraph{Georgia Tech Research Institute}  \hangindent=2em  --- 
	\textit{Classification of Unresolved Space Objects from Spectro Temporal Signatures} ---
	Role: Co-I (Velez-Reyes, PI) --- Amount awarded: \$50,000 (August 2022-January 2023)



\section*{Panel Participation/Organization}
\begin{itemize}[leftmargin=*,labelindent=5pt,itemindent=-15pt]
  \item \textbf{ISCB Student Council Symposium 2024 \bigdot  Monr\'eal, Canada} \bigdot~\textit{July~2024} \bigdot Participant \\ ``The impact of Student Council in your personal and scientific trajectory''  
  \item \textbf{ISCB Student Council Symposium 2023 \bigdot  Lyon, France} \bigdot~\textit{July~2023} \bigdot Participant  \\ ``Exploring the Potential of AI in Revolutionizing Bioinformatics Research: Opportunities and Challenge''
  \item \textbf{RECOMB~2020 \bigdot~Virtual} \bigdot~\textit{June 2020} \bigdot  Organizer  \\ ``Future of Algorithms in Biology''
    \item \textbf{ISCB Student Council Symposium 2017 \bigdot Prague, Czechia} \bigdot~\textit{July~2017} \bigdot Organizer  \\ ``How to build your scientific network as an early career researcher''
\end{itemize}

\section*{Invited Talks}

\begin{itemize}[leftmargin=*,labelindent=5pt,itemindent=-15pt]
  \item \textbf{New Mexico Tech, Computer Science Symposium \bigdot Socorro, NM} \bigdot~\textit{September~2022} \bigdot ``Toward building an automated bioinformatician''
  \item \textbf{University of Texas at El Paso, Interdisciplinary Research Event \bigdot~El Paso, TX} \bigdot~\textit{March~2022} \bigdot ``Who needs a manual? Automating scientific tools to accelerate innovation''
  \item \textbf{University of Texas at El Paso, Biology Department Seminar \bigdot~El Paso, TX} \bigdot~\textit{October~2019} \bigdot ``Toward building an automated bioinformatician: more accurate transcript assembly via parameter advising''
  \item \textbf{Workshop on Automated Algorithm Design at the Toyota Technical Institute \bigdot~Chicago, IL} \bigdot~\textit{August~2019} \bigdot~``Toward building an automated bioinformatician: more accurate transcript assembly via parameter advising''
  \item \textbf{Rutgers University, Camden \bigdot~Camden, NJ} \bigdot~\textit{April~2019} \bigdot~``Toward building an automated bioinformatician: 
parameter advising for improved scientific discovery''
  \item \textbf{University of Texas at El Paso \bigdot~El Paso, TX} \bigdot~\textit{February~2019} \bigdot~``Toward building an automated bioinformatician: 
parameter advising for improved scientific discovery''
  \item \textbf{Biological Data Science \bigdot~Cold Spring Harbor, NY} \bigdot~\textit{November~2018} \bigdot~``Building an automated bioinformatician---More accurate, large-scale genomic discovery using parameter advising'' 
   \item \textbf{StringBio~2018 \bigdot Orlando, FL} \bigdot~\textit{October~2018} \bigdot~``Multiple sequence alignment accuracy estimation and its role in creating an automated bioinformatician'' 
   \item \textbf{ISCB European Student Council Symposium 2018 \bigdot Athens, Greece} \bigdot~\textit{September~2018} \bigdot~``Building an automated bioinformatician: More accurate, large-scale genomic discovery using parameter advising''
    \item \textbf{ISMB~2018 \bigdot Chicago, IL} \bigdot~\textit{July~2018} \bigdot~``Building an automated bioinformatician: More accurate, large-scale genomic discovery using parameter advising''
    \item \textbf{ISMB~2016 \bigdot Orlando, FL} \bigdot~\textit{July~2016} \bigdot~``Adaptive local realignment via parameter advising'' 
    \item \textbf{Carnegie Mellon University \bigdot Pittsburgh, PA} \bigdot~\textit{May~2016} \bigdot~``Parameter advising for multiple sequence alignment''
    \item \textbf{Reed College \bigdot Portland, OR} \bigdot~\textit{March~2016} \bigdot ``Parameter advising for multiple sequence alignment''
    \item \textbf{ISCB Student Council Symposium 2014 \bigdot  Boston, MA} \bigdot~\textit{July~2014} \bigdot~``Advising multiple sequence alignments''
   
\end{itemize}

\section*{Notable Training}
\begin{itemize}
\item\textbf{LearnLab: Computing Education Research} --- July 2024
\item\textbf{Autism \& Mental Health Series} --- Fall 2023
\item\textbf{Teaching as Research (TAR) Institute: Generative AI} --- October 2023
\item\textbf{Disability Resources 101} -- September 2023
\item\textbf{Adapting to Generative AI in the Classroom} --- August 2023
\item\textbf{ACUE Inclusive Teaching for Equitable Learning Mircrocredential} --- Spring 2022 
\item\textbf{UTEP Center for Instructional Design's Teaching Online Academy} --- July 2020
\end{itemize}

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\section*{Released Software}
\subparagraph{Scallop Parameter Advising}						github.com/Kingsford-Group/scallopadvising
\subparagraph{Feature-based Accuracy Estimator (Facet)} 			facet.cs.arizona.edu
\subparagraph{Opal v3.0}										opal.cs.arizona.edu 
\subparagraph{Sister Clade Extractor (SiClE)}						eebweb.arizona.edu/sicle/
\subparagraph{Profile based Multiple Fast RNA alignment (PMFastR)}	genome.ucf.edu/PMFastR 

\section*{Honors and Awards}

\begin{itemize}
    \item Best Student Poster Presentation, UTEP COURI Symposium, Spring 2022 (to advisee Demetrius Hernandez)
    \item Best Student Paper Award, ACM-BCB 2019 (to advisee Fiyin Gbosibo)
    \item Outstanding Poster Presentation, ISMB 2018 (presenting author for the EIC poster)
    \item Lane Fellowship, CMU CBD, 2016-2019
    \item UA Department Fellowship, 2013,2014,2015
    \item UA Department Service award, 2013
    \item UA Department Scholarship award, 2016
    \item NSF IGERT Fellow, 2010-2013
    \item NSF REU in Computer Vision, 2006
    \item Travel Fellowships
    \begin{itemize}
    	\item \{Event\} --- \{Location\} --- \{Funding Agency\}
    	\item ECCB 2018 --- Athens, Greece --- ISCB Student Council
    	\item ISMB 2018 --- Chicago, IL --- ISCB
	\item ISMB/ECCB 2017 --- Prague, Czech Republic --- ISCB Student Council 
	\item ISMB 2016 --- Orlando, FL --- ISCB Student Council
	\item ISMB/ECCB 2015 --- Dublin, Ireland --- ISCB Student Council
	\item ACM-BCB 2014 --- Newport Beach, CA --- NSF
	\item ISMB 2014 --- Boston, MA --- ISCB Student Council 
	\item ISMB/ECCB 2013 --- Berlin, Germany --- NSF
	\item RECOMB 2012 --- Barcelona, Spain --- UA GPSC
	\item RECOMB 2012 --- Barcelona, Spain --- NSF
	\item ISMB/ECCB 2011 --- Vienna, Austria --- UA GPSC
	\item WABI 2009 --- Philadelphia, PA --- UCF Graduate Council 
	\item RECOMB 2009 --- Tucson, AZ --- RECOMB
	\item RECOMB 2009 --- Tucson, AZ --- UCF Graduate Council
    \end{itemize}
\end{itemize}

\section*{External Service and Leadership Activities}


\subparagraph{Member} Professional organizations
\begin{itemize}
\item International Society for Computational Biology (ISCB)
\item Association for Computing Machinery (ACM), ACM SIGBio, ACM SIGAct
\item Upsilon Pi Epsilon
\end{itemize}

\subparagraph{Editor} 
\begin{itemize}[leftmargin=!,labelindent=5pt,itemindent=-15pt]
	\item \textbf{Social Media Editor \& Editorial Board}\\
	Journal of Computational Biology
\end{itemize}

\subparagraph{Committee Member} International conferences and workshops.
\begin{itemize}[leftmargin=!,labelindent=5pt,itemindent=-15pt]
    \item \textbf{Program Committee} \\ IEEE ICCABS 2017; RECOMB-SEQ 2020, 2021, 2022, 2024; ISMB(/ECCB) 2020, 2021, 2022, 2024; ACM-BCB 2022
    \item \textbf{Outreach Coordinator} \\ ACM-BCB 2020
    \item \textbf{Organizing Committee} \\
    Workshop on the Future of Algorithms in Biology (FAB) 2018; 
    ISCB SCS 2014, 2015, 2017;  \\
    ISCB SCS\nobreakdash-Africa 2017; 
    ISCB SCS-Latin America 2018;  
    \item \textbf{Student Activities Co-Chair} \\ ACM-BCB 2016
    \item \textbf{Publicity Chair} \\ ACM-BCB 2020
    \item \textbf{Travel Fellowships Co-Chair}\\ GLBIO 2024
\end{itemize}


\subparagraph{Reviewer} 
\begin{itemize}[leftmargin=!,labelindent=5pt,itemindent=-15pt]
    \item \textbf{Research Grants} \\ 
    	NSF (including BIO, CISE, MPS Directorates; 2019, 2021 [x2], 2022, 2024), 
	%NSF BIO Directorate (2019, 2021), 
    	%NSF CISE Directorate (2021), 
	%NSF MPS Directorate (2022),
	U.S.-Israel Binational Science Foundation (2021), 
	Antwerp University Association (2021)
    \item \textbf{Books} \\
    	CRC Press
    \item \textbf{Journals} \\
        Bioinformatics,
        BMC Bioinformatics, 
        Journal of Computational Biology,
        AI (MDPI), 
        PLOS One, 
        PeerJ, 
        Nucleic Acids Research, 
        Journal of Health Informatics Research,
        Current Bioinformatics.
    \item \textbf{Conferences} \\
    	ACM SIGCSE (2024),
        ISCB SCS (2014-19), % 7 
        ISCB SCS-LA (2014), % 8
        ISCB ESCS (2016), % 6?
	RECOMB (2017-20), % 1 & 1 & 1
	WABI (2017,22), % 1
	ISMB/ECCB (2017,19,21), %1 & 1
    	IEEE ICCABS (2017), % 3
	ISMB (2018,20,22), %5
	ACM-BCB (2018-22), %1 
	Grace Hopper (2019), %15 posters
	ESA (2019). % 2 papers
     \item \textbf{Competitions} \\\
     	ISMB Posters (2017-18),
	RECOMB Posters (2019), 
     	ISCB Wikipedia Competition (2017-20)
     \item \textbf{Other} \\
         ISCB SCS Travel Grants (2016-18), 
         UA GPSC Travel Grants (various 2011-2014)
\end{itemize}

\subparagraph{Board of Directors}
International Society for Computational Biology  \bigdot 2017--2019
\begin{itemize}
    \item Student Council representative 
    \item advocate for students needs within the society
    \item help make decisions on the societal operations
\end{itemize}

\subparagraph{Executive Team}
International Society for Computational Biology Student Council \bigdot 2017--2019
\begin{itemize} 
    \item oversee and advise on committee actions and conference planning 
    \item help make decisions on the council operations
\end{itemize}

\subparagraph{Web Committee Co-chair}
International Society for Computational Biology Student Council  \bigdot 2012-2017
\begin{itemize}
    \item managed a group of student volunteers to maintain the ISCB-SC website
    \item oversaw the development and maintenance of the conference submission system
\end{itemize}

\subparagraph{AGCCS Computer Science Representative}
University of Arizona \bigdot 7/2012--5/2013
\begin{itemize}
    \item Associate Graduate Council for the College of Science at the University of Arizona
    \item advocate for students in the Computer Science department in affairs to the deans and college administration
\end{itemize}

\subparagraph{Chair, Graduate Student Council}
University of Arizona \bigdot 7/2011--5/2012
\begin{itemize}
    \item organized events for graduate students and prospective students in the Computer Science Department
    \item coordinate discussions with the department administration
\end{itemize}

\subparagraph{Volunteer Coordinator, Graduate Student Council}
University of Arizona \bigdot 7/2010--5/2011
\begin{itemize}
    \item find volunteers to organize department seminar setup and tear down
    \item coordinate responsibilities for department events planned by the council
\end{itemize}

\subparagraph{Co-chair, Science Salon}
University of Arizona \bigdot 7/2011--5/2013
\begin{itemize}
    \item organized discussions about interdisciplinary science
    \item vetted topic ideas and assisted in their presentation
    \item guided discussion at events
\end{itemize}

\subparagraph{Conference Volunteer}
\begin{itemize}
	\item ISMB 2012, RECOMB Satellites 2019
\end{itemize}

\subparagraph{Conference Attendance}
\begin{itemize}
	\item ACM-BCB 2014, 15, 16, 19, 20
	\item Cold Spring Harbor Laboratory: Biological Data Sciences 2018
	\item ECCB 2018
	\item ESCS 2018
	\item FoCS 2009
	\item ICML 2019
	\item IGERT Symposium on Deep Genomics 2013
	\item International Workshop on String Algorithms in Bioinformatics (StringBio) 2018
	\item ISMB/ECCB 2011,13, 15, 17, 19, 21, 23
	\item ISMB 2012, 14, 16, 18, 20, 22
	\item MAGE 2013
	\item NSF-NIH Joint Workshop in Emerging AI in Biology 2023
	\item RECOMB 2009, 12, 17, 19, 20, 21, 22
	\item ISCB-SCS 2012, 13, 14, 15, 16
	\item WABI 2009, 15, 16, 20, 21
	\item Workshop on Automated Algorithm Design at the Toyota Technical Institute 2019
	\item Workshop on Learning-Based Algorithms at the Toyota Technical Institute 2019
	\item Workshop on Emerging Technologies for Sequence Analysis 2018
	\item Workshop on the Future of Algorithms in Biology 2018
\end{itemize}
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