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Describe the bug
Skeleton tips are easily overwritten within the plantcv morphology sub-package since utilizing tips happens in a few other functions as part of the algorithm for sorting or pruning back segments.
To Reproduce
Steps to reproduce the behavior (including sample data and code really help):
Starting with image from the morphology tutorial
Run function(s) pcv.morphology.find_tips with label=None and then run pcv.morphology.segment_sort or pcv.morphology.prune
See error (small green are expected tips, large green are the recorded tip coordinates)
Expected behavior
Only save tip coordinates when the function is explicitly ran/
Local environment (please complete the following information):
PlantCV Version : <= 4.6.0
Additional context
Making a helper function to be able to call within functions and now pcv.morphology.find_tips will be a function that saves to Outputs.observations and is a wrapper of pcv.morphology._find_tips.
The text was updated successfully, but these errors were encountered:
Describe the bug
Skeleton tips are easily overwritten within the plantcv morphology sub-package since utilizing tips happens in a few other functions as part of the algorithm for sorting or pruning back segments.
To Reproduce
Steps to reproduce the behavior (including sample data and code really help):
pcv.morphology.find_tips
withlabel=None
and then runpcv.morphology.segment_sort
orpcv.morphology.prune
Expected behavior
Only save tip coordinates when the function is explicitly ran/
Local environment (please complete the following information):
Additional context
Making a helper function to be able to call within functions and now
pcv.morphology.find_tips
will be a function that saves toOutputs.observations
and is a wrapper ofpcv.morphology._find_tips
.The text was updated successfully, but these errors were encountered: