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deepmind11/README.md

Hey, I'm Harshit.

I think the bottleneck in modern biotech isn't the biology; it's the infrastructure underneath it. Most of my time goes into building the compute layer that sits between raw sequencing reads and something a clinician can actually act on.

What I find endlessly interesting right now is where multi-agent AI systems meet computational biology. Not as a buzzword, but as an engineering problem: can you build AI agents that reason over experimental context, triage QC failures, and orchestrate downstream analysis the way a senior bioinformatician would? I'm actively building toward that.

What I'm working with

pipelines:    Nextflow, Snakemake
languages:    Python, R, SQL, Bash
cloud:        AWS (S3, Batch, Lambda, Fargate, EventBridge)
infra:        Docker, Terraform, Linux, HPC/Slurm
genomics:     variant calling, cfDNA, ChIP-seq, RNA-seq, scRNA-seq, multi-omics
exploration:  multi-agent orchestration, agentic workflows, LLM tooling

What I think about

  • How to make genomics pipelines less fragile and more self-aware
  • Whether AI agents can meaningfully reduce the operational burden in clinical labs
  • The architecture that lets a team go from sequencing reads to insight without the pipeline becoming the bottleneck
  • Why the best bioinformatics infrastructure looks a lot like good software engineering

Find me

LinkedIn Email


Columbia MA Biotechnology '23  |  IIT Kanpur BS Chemistry '19  |  Published in Inorganic Chemistry

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