[pre-commit.ci] pre-commit autoupdate

[pre-commit-ci]

updates:

• github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0
• github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.15.0
• github.com/tox-dev/tox-ini-fmt: 1.5.0 → 1.7.1
• github.com/pre-commit/mirrors-clang-format: v20.1.6 → v21.1.8
• github.com/MarcoGorelli/cython-lint: v0.16.6 → v0.19.0
• github.com/njzjz/mirrors-bibtex-tidy: v1.13.0 → v1.14.0
• github.com/Lucas-C/pre-commit-hooks: v1.5.5 → v1.5.6

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 95.26%. Comparing base (f2d9944) to head (86faaf3).

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #2377   +/-   ##
=======================================
  Coverage   95.26%   95.26%           
=======================================
  Files          17       17           
  Lines        1457     1457           
=======================================
  Hits         1388     1388           
  Misses         69       69           

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[codspeed-hq]

Merging this PR will degrade performance by 11.53%

⚠️ Unknown Walltime execution environment detected

Using the Walltime instrument on standard Hosted Runners will lead to inconsistent data.

For the most accurate results, we recommend using CodSpeed Macro Runners: bare-metal machines fine-tuned for performance measurement consistency.

❌ 3 regressed benchmarks
✅ 6 untouched benchmarks
⏩ 8 skipped benchmarks¹

⚠️ Please fix the performance issues or acknowledge them on CodSpeed.

Performance Changes

	Mode	Benchmark	BASE	HEAD	Efficiency
❌	WallTime	test_benchmark_hmm[reacnetgen_param0]	10.5 ms	11.8 ms	-11.05%
❌	WallTime	test_benchmark_detect[reacnetgen_param2]	2.9 ms	3.3 ms	-11.53%
❌	WallTime	test_benchmark_detect[reacnetgen_param1]	2.9 ms	3.3 ms	-10.61%

---

_{Comparing pre-commit-ci-update-config (86faaf3) with master (f2d9944)}

Footnotes

1. 8 benchmarks were skipped, so the baseline results were used instead. If they were deleted from the codebase, click here and archive them to remove them from the performance reports. ↩

[codspeed-hq]

CodSpeed WallTime Performance Report

Merging #2377 will not alter performance

_{Comparing pre-commit-ci-update-config (503b52a) with master (cb83bba)¹}

Summary

✅ 9 untouched

Footnotes

1. No successful run was found on master (1ead4bb) during the generation of this report, so cb83bba was used instead as the comparison base. There might be some changes unrelated to this pull request in this report. ↩