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siRBench

Repository layout (quick map):

  • benchmark/: Docker-based competitor pipeline (prepare/train/test wrappers). Outputs go to benchmark/competitors/updated_validation_results/ by default, or benchmark/competitors/original_results/ when running with --original.
  • data/: CSV splits, feature columns, and helper scripts (train/val/test/leftout).
  • siRBench-model/: Standalone model (XGBoost + LightGBM) with uv setup and training/inference scripts.

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siRNA efficacy prediction benchmarking dataset and state of art model

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