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Code associated with the paper "Cell-type resolved transcriptional networks reveal molecular hallmarks of cellular senescence", by Alda Sabalic, Victoria Moiseeva, Andres Cisneros, Oleg Deryagin, Eusebio Perdiguero, Pura Muñoz-Cánoves, and Jordi Garcia-Ojalvo

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df_filteredKS_142/df_filteredKS.csv_ECFS_protocol
df_filteredKS_142/df_filteredKS.csv_ECFS_protocol
 
 
figures
figures
 
 
validation_tdTomato
validation_tdTomato
 
 
1_Gene filtering - majority rule and KS.ipynb
1_Gene filtering - majority rule and KS.ipynb
 
 
2_ECFS protocol - definition of entropy H in community selection.ipynb
2_ECFS protocol - definition of entropy H in community selection.ipynb
 
 
3_Analyzing top 10 selected genes.ipynb
3_Analyzing top 10 selected genes.ipynb
 
 
4_PCA, UMAP and NETWORK-COMMUNITY ANALYSIS for different number of genes.ipynb
4_PCA, UMAP and NETWORK-COMMUNITY ANALYSIS for different number of genes.ipynb
 
 
ECFS_algorithm.rar
ECFS_algorithm.rar
 
 
README.md
README.md
 
 
df_nonzero_means.csv
df_nonzero_means.csv
 
 
df_nonzero_reps.rar
df_nonzero_reps.rar
 
 
geneID_ens_symbol.csv
geneID_ens_symbol.csv
 
 
geneID_ens_symbol_KSranked.xlsx
geneID_ens_symbol_KSranked.xlsx
 
 
ranked_df_142.csv
ranked_df_142.csv
 
 
rpkm.tsv
rpkm.tsv
 
 

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CellularSenescence

Code associated with the paper "Cell-type resolved transcriptional networks reveal molecular hallmarks of cellular senescence", by Alda Sabalic, Victoria Moiseeva, Andres Cisneros, Oleg Deryagin, Eusebio Perdiguero, Pura Muñoz-Cánoves, and Jordi Garcia-Ojalvo

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Code associated with the paper "Cell-type resolved transcriptional networks reveal molecular hallmarks of cellular senescence", by Alda Sabalic, Victoria Moiseeva, Andres Cisneros, Oleg Deryagin, Eusebio Perdiguero, Pura Muñoz-Cánoves, and Jordi Garcia-Ojalvo

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