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{tools}[foss/2025b,intel/2025b] MUSCLE3 v0.10.0 #26276
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0866795
adding easyconfigs: MUSCLE3-0.10.0-foss-2025b.eb, MUSCLE3-0.10.0-inte…
SimonPinches e7b6f96
MUSCLE3/0.10.0: Align foss/intel 2025b versions
SimonPinches e3d626e
Merge branch 'develop' into 20260615105234_new_pr_MUSCLE30100
SimonPinches a9bb70a
msgpack-cxx/7.0.0 for 2025b toolchains
SimonPinches 4f70211
add CMake build dependency for MUSCLE3 0.10.0
boegel 48cb754
MUSCLE3/0.10.0: Use msgpack-cxx/8.0.0
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105 changes: 105 additions & 0 deletions
105
easybuild/easyconfigs/m/MUSCLE3/MUSCLE3-0.10.0-foss-2025b.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,105 @@ | ||
| easyblock = 'ConfigureMakePythonPackage' | ||
|
|
||
| name = 'MUSCLE3' | ||
| version = '0.10.0' | ||
|
|
||
| homepage = 'https://muscle3.readthedocs.io/en/latest/index.html' | ||
|
|
||
| description = """MUSCLE3 allows connecting multiple simulation models | ||
| together into a multiscale simulation. Simulation models can be as | ||
| simple as a single Python file, or as complex as a combination of | ||
| multiple separate simulation codes written in C++ or Fortran, and | ||
| running on an HPC machine.""" | ||
|
|
||
| toolchain = {'name': 'foss', 'version': '2025b'} | ||
| toolchainopts = {'usempi': True} | ||
|
|
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| source_urls = ['https://github.com/multiscale/%(namelower)s/archive/refs/tags/'] | ||
| sources = ['%(version)s.tar.gz'] | ||
| checksums = ['f331eac3b56523ece8731e0141857563d0b34740a23892e6669c45c746338cd9'] | ||
|
|
||
| builddependencies = [ | ||
| ('CMake', '3.31.8'), | ||
| ('googletest', '1.17.0'), | ||
| ] | ||
|
|
||
| dependencies = [ | ||
| ('msgpack-cxx', '7.0.0'), | ||
| ('zlib', '1.3.1'), | ||
| ('Python', '3.13.5'), | ||
| ('Python-bundle-PyPI', '2025.07'), | ||
| ('SciPy-bundle', '2025.07'), | ||
| ('PyYAML', '6.0.2'), | ||
| ('matplotlib', '3.10.5'), | ||
| ] | ||
|
|
||
| skipsteps = ['configure'] | ||
|
|
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| prebuildopts = 'msgpack_ROOT=$EBROOTMSGPACKMINC ' | ||
| preinstallopts = 'PREFIX=%(installdir)s ' | ||
| testopts = 'googletest_ROOT=$EBROOTGOOGLETEST' | ||
|
|
||
| exts_defaultclass = 'PythonPackage' | ||
|
|
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| exts_default_options = { | ||
| 'source_urls': [PYPI_SOURCE], | ||
| } | ||
|
|
||
| # click and psutil are provided by the Python-bundle-PyPI dependency | ||
| exts_list = [ | ||
| ('parsimonious', '0.11.0', { | ||
| 'checksums': ['e080377d98957beec053580d38ae54fcdf7c470fb78670ba4bf8b5f9d5cad2a9'], | ||
| }), | ||
| ('typing_extensions', '4.15.0', { | ||
| 'checksums': ['0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466'], | ||
| }), | ||
| ('msgpack', '1.1.2', { | ||
| 'checksums': ['3b60763c1373dd60f398488069bcdc703cd08a711477b5d480eecc9f9626f47e'], | ||
| }), | ||
| ('yatiml', '0.12.0', { | ||
| 'checksums': ['30eb62a51b9f60df095ff709a881c576b0c720b6dcd10994dde73872c4a1e1f4'], | ||
| }), | ||
| ('ymmsl', '0.17.0', { | ||
| 'checksums': ['29ed4ebb1eabc8e69df87e78a8108f88e942b9c630dde782b39fb2498e757c5f'], | ||
| }), | ||
| ('muscle3', version, { | ||
| 'source_tmpl': '%(version)s.tar.gz', | ||
| 'source_urls': ['https://github.com/multiscale/muscle3/archive/refs/tags/'], | ||
| 'checksums': ['f331eac3b56523ece8731e0141857563d0b34740a23892e6669c45c746338cd9'], | ||
| }), | ||
| ] | ||
|
|
||
| modextrapaths = { | ||
| 'MUSCLE3_HOME': '', | ||
| } | ||
|
|
||
| sanity_check_paths = { | ||
| 'files': ['include/libmuscle.f90', | ||
| 'include/libmuscle.mod', | ||
| 'include/libmuscle/libmuscle.hpp', | ||
| 'include/ymmsl/ymmsl.hpp', | ||
| 'lib/libmuscle.a', | ||
| 'lib/libmuscle.%s' % SHLIB_EXT, | ||
| 'lib/libmuscle_fortran.a', | ||
| 'lib/libmuscle_fortran.%s' % SHLIB_EXT, | ||
| 'lib/libymmsl.a', | ||
| 'lib/libymmsl.%s' % SHLIB_EXT, | ||
| 'lib/libymmsl_fortran.a', | ||
| 'lib/libymmsl_fortran.%s' % SHLIB_EXT, | ||
| 'lib/pkgconfig/libmuscle.pc', | ||
| 'lib/pkgconfig/libmuscle_fortran.pc', | ||
| 'lib/pkgconfig/ymmsl.pc', | ||
| 'lib/pkgconfig/ymmsl_fortran.pc'], | ||
| 'dirs': ['bin', | ||
| 'include/libmuscle', | ||
| 'include/ymmsl', | ||
| 'lib/pkgconfig', | ||
| 'lib64'] | ||
| } | ||
|
|
||
| sanity_check_commands = [ | ||
| "muscle3 --help", | ||
| "muscle_manager --help", | ||
| ] | ||
|
|
||
| moduleclass = 'tools' |
105 changes: 105 additions & 0 deletions
105
easybuild/easyconfigs/m/MUSCLE3/MUSCLE3-0.10.0-intel-2025b.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,105 @@ | ||
| easyblock = 'ConfigureMakePythonPackage' | ||
|
|
||
| name = 'MUSCLE3' | ||
| version = '0.10.0' | ||
|
|
||
| homepage = 'https://muscle3.readthedocs.io/en/latest/index.html' | ||
|
|
||
| description = """MUSCLE3 allows connecting multiple simulation models | ||
| together into a multiscale simulation. Simulation models can be as | ||
| simple as a single Python file, or as complex as a combination of | ||
| multiple separate simulation codes written in C++ or Fortran, and | ||
| running on an HPC machine.""" | ||
|
|
||
| toolchain = {'name': 'intel', 'version': '2025b'} | ||
| toolchainopts = {'usempi': True} | ||
|
|
||
| source_urls = ['https://github.com/multiscale/%(namelower)s/archive/refs/tags/'] | ||
| sources = ['%(version)s.tar.gz'] | ||
| checksums = ['f331eac3b56523ece8731e0141857563d0b34740a23892e6669c45c746338cd9'] | ||
|
|
||
| builddependencies = [ | ||
| ('CMake', '3.31.8'), | ||
| ('googletest', '1.17.0'), | ||
| ] | ||
|
|
||
| dependencies = [ | ||
| ('msgpack-cxx', '7.0.0'), | ||
| ('zlib', '1.3.1'), | ||
| ('Python', '3.13.5'), | ||
| ('Python-bundle-PyPI', '2025.07'), | ||
| ('SciPy-bundle', '2025.07'), | ||
| ('PyYAML', '6.0.2'), | ||
| ('matplotlib', '3.10.5'), | ||
| ] | ||
|
|
||
| skipsteps = ['configure'] | ||
|
|
||
| prebuildopts = 'msgpack_ROOT=$EBROOTMSGPACKMINC ' | ||
| preinstallopts = 'PREFIX=%(installdir)s ' | ||
| testopts = 'googletest_ROOT=$EBROOTGOOGLETEST' | ||
|
|
||
| exts_defaultclass = 'PythonPackage' | ||
|
|
||
| exts_default_options = { | ||
| 'source_urls': [PYPI_SOURCE], | ||
| } | ||
|
|
||
| # click and psutil are provided by the Python-bundle-PyPI dependency | ||
| exts_list = [ | ||
| ('parsimonious', '0.11.0', { | ||
| 'checksums': ['e080377d98957beec053580d38ae54fcdf7c470fb78670ba4bf8b5f9d5cad2a9'], | ||
| }), | ||
| ('typing_extensions', '4.15.0', { | ||
| 'checksums': ['0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466'], | ||
| }), | ||
| ('msgpack', '1.1.2', { | ||
| 'checksums': ['3b60763c1373dd60f398488069bcdc703cd08a711477b5d480eecc9f9626f47e'], | ||
| }), | ||
| ('yatiml', '0.12.0', { | ||
| 'checksums': ['30eb62a51b9f60df095ff709a881c576b0c720b6dcd10994dde73872c4a1e1f4'], | ||
| }), | ||
| ('ymmsl', '0.17.0', { | ||
| 'checksums': ['29ed4ebb1eabc8e69df87e78a8108f88e942b9c630dde782b39fb2498e757c5f'], | ||
| }), | ||
| ('muscle3', version, { | ||
| 'source_tmpl': '%(version)s.tar.gz', | ||
| 'source_urls': ['https://github.com/multiscale/muscle3/archive/refs/tags/'], | ||
| 'checksums': ['f331eac3b56523ece8731e0141857563d0b34740a23892e6669c45c746338cd9'], | ||
| }), | ||
| ] | ||
|
|
||
| modextrapaths = { | ||
| 'MUSCLE3_HOME': '', | ||
| } | ||
|
|
||
| sanity_check_paths = { | ||
| 'files': ['include/libmuscle.f90', | ||
| 'include/libmuscle.mod', | ||
| 'include/libmuscle/libmuscle.hpp', | ||
| 'include/ymmsl/ymmsl.hpp', | ||
| 'lib/libmuscle.a', | ||
| 'lib/libmuscle.%s' % SHLIB_EXT, | ||
| 'lib/libmuscle_fortran.a', | ||
| 'lib/libmuscle_fortran.%s' % SHLIB_EXT, | ||
| 'lib/libymmsl.a', | ||
| 'lib/libymmsl.%s' % SHLIB_EXT, | ||
| 'lib/libymmsl_fortran.a', | ||
| 'lib/libymmsl_fortran.%s' % SHLIB_EXT, | ||
| 'lib/pkgconfig/libmuscle.pc', | ||
| 'lib/pkgconfig/libmuscle_fortran.pc', | ||
| 'lib/pkgconfig/ymmsl.pc', | ||
| 'lib/pkgconfig/ymmsl_fortran.pc'], | ||
| 'dirs': ['bin', | ||
| 'include/libmuscle', | ||
| 'include/ymmsl', | ||
| 'lib/pkgconfig', | ||
| 'lib64'] | ||
| } | ||
|
|
||
| sanity_check_commands = [ | ||
| "muscle3 --help", | ||
| "muscle_manager --help", | ||
| ] | ||
|
|
||
| moduleclass = 'tools' | ||
37 changes: 37 additions & 0 deletions
37
easybuild/easyconfigs/m/msgpack-cxx/msgpack-cxx-7.0.0-GCC-14.3.0.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| # Thomas Hoffmann, EMBL Heidelberg, structures-it@embl.de, 2021/04 | ||
| easyblock = 'CMakeMake' | ||
|
|
||
| name = 'msgpack-cxx' | ||
| version = '7.0.0' | ||
|
|
||
| homepage = 'http://msgpack.org/' | ||
| description = """MessagePack is an efficient binary serialization format, which lets you exchange | ||
| data among multiple languages like JSON, except that it's faster and smaller. | ||
| Small integers are encoded into a single byte while typical short strings | ||
| require only one extra byte in addition to the strings themselves.""" | ||
|
|
||
| toolchain = {'name': 'GCC', 'version': '14.3.0'} | ||
|
|
||
| source_urls = ['https://github.com/msgpack/msgpack-c/releases/download/cpp-%(version)s'] | ||
| sources = ['msgpack-cxx-%(version)s.tar.gz'] | ||
| checksums = ['7504b7af7e7b9002ce529d4f941e1b7fb1fb435768780ce7da4abaac79bb156f'] | ||
|
|
||
| builddependencies = [ | ||
| ('binutils', '2.44'), | ||
| ('CMake', '4.0.3'), | ||
| ('googletest', '1.17.0'), | ||
| ] | ||
|
|
||
| dependencies = [ | ||
| ('Boost', '1.88.0') | ||
| ] | ||
|
|
||
| sanity_check_paths = { | ||
| 'files': [ | ||
| 'lib/cmake/msgpack-cxx/msgpack-cxx-config.cmake', | ||
| 'include/msgpack.hpp', | ||
| ], | ||
| 'dirs': ['include/msgpack'], | ||
| } | ||
|
|
||
| moduleclass = 'lib' |
37 changes: 37 additions & 0 deletions
37
easybuild/easyconfigs/m/msgpack-cxx/msgpack-cxx-7.0.0-intel-compilers-2025.2.0.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| # Thomas Hoffmann, EMBL Heidelberg, structures-it@embl.de, 2021/04 | ||
| easyblock = 'CMakeMake' | ||
|
|
||
| name = 'msgpack-cxx' | ||
| version = '7.0.0' | ||
|
|
||
| homepage = 'http://msgpack.org/' | ||
| description = """MessagePack is an efficient binary serialization format, which lets you exchange | ||
| data among multiple languages like JSON, except that it's faster and smaller. | ||
| Small integers are encoded into a single byte while typical short strings | ||
| require only one extra byte in addition to the strings themselves.""" | ||
|
|
||
| toolchain = {'name': 'intel-compilers', 'version': '2025.2.0'} | ||
|
|
||
| source_urls = ['https://github.com/msgpack/msgpack-c/releases/download/cpp-%(version)s'] | ||
| sources = ['msgpack-cxx-%(version)s.tar.gz'] | ||
| checksums = ['7504b7af7e7b9002ce529d4f941e1b7fb1fb435768780ce7da4abaac79bb156f'] | ||
|
|
||
| builddependencies = [ | ||
| ('binutils', '2.44'), | ||
| ('CMake', '4.0.3'), | ||
| ('googletest', '1.17.0'), | ||
| ] | ||
|
|
||
| dependencies = [ | ||
| ('Boost', '1.88.0') | ||
| ] | ||
|
|
||
| sanity_check_paths = { | ||
| 'files': [ | ||
| 'lib/cmake/msgpack-cxx/msgpack-cxx-config.cmake', | ||
| 'include/msgpack.hpp', | ||
| ], | ||
| 'dirs': ['include/msgpack'], | ||
| } | ||
|
|
||
| moduleclass = 'lib' |
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