Skip to content

Added documentation from II GDI Contentathon - #389

Open
svarona wants to merge 19 commits into
elixir-europe:mainfrom
BU-ISCIII:main
Open

Added documentation from II GDI Contentathon#389
svarona wants to merge 19 commits into
elixir-europe:mainfrom
BU-ISCIII:main

Conversation

@svarona

@svarona svarona commented Dec 5, 2025

Copy link
Copy Markdown
Contributor

Added documentation from II GDI Contentathon from GDI Task 7.3 contribution.

This PR updates the Markdown document:

  • data-description/human-clinical-and-health-data.md
  • data-description/pathogen-charcterisation.md
  • data-description/fair-data.md
  • data-sources/human-biomolecular-data.md
  • data-sources/pathogen-characterization.md

Using the following documents as guide:

  • Data sources.docx
  • Data description.docx

@svarona
svarona marked this pull request as ready for review December 5, 2025 11:20
@svarona
svarona requested review from a team and bedroesb as code owners December 5, 2025 11:20
* Information about pooled/multiplexed runs, including the instruments used, configurations used, whether processing was automated/manual, and demultiplexing.
* A description of how the instrument data was converted to standardised formats.
* The algorithms used in normalisation/alignment protocols. You should refer to [general best practice for sequencing projects](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008260).
* Collection protocol used.

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is duplicated, and I think there is a comment bit that is duplicated as well. Probably a pasting typo

title: Pathogen characterisation
description: Finding (meta)data standards and documentation.
contributors: [Wolmar Nyberg Åkerström, Zahra Waheed, Liane Hughes, Flora D'Anna, Patricia Palagi, Wolfgang Maier, Diana Pilvar, Rafael Andrade Buono]
contributors: [Wolmar Nyberg Åkerström, Zahra Waheed, Liane Hughes, Flora D'Anna, Patricia Palagi, Wolfgang Maier, Diana Pilvar, Rafael Andrade Buono, Paula Mölling, Abeer Fadda, Dilza Campos, Aída moure Fernández, Andreas Scherer, Pau Pascual Mas, Paula Mölling, Abeer Fadda, Dilza Campos, Aída moure Fernández, Andreas Scherer, Pau Pascual Mas]

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Some collaborators are duped

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

5 participants