⚡ Bolt: Optimize Series iteration in processing.py#29
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- Replaces slow Pandas Series iteration with list iteration in `map_psms_to_spectra`. - Measures ~2.3x speedup for this operation. - Updates .gitignore to include __pycache__. - Updates Bolt's journal. Co-authored-by: erayfirat <59361860+erayfirat@users.noreply.github.com>
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💡 What: Optimized the loop in
map_psms_to_spectrainprocessing.pyby converting the Pandas Series to a list before iterating.🎯 Why: Iterating directly over a Pandas Series incurs significant overhead due to indexing and boxing.
📊 Impact: Measured ~2.3x speedup for the loop operation (benchmark verified).
🔬 Measurement:
benchmark_loop.py(removed from PR) showed reduction from ~0.023s to ~0.010s for 100k elements.PR created automatically by Jules for task 16755241575190893426 started by @erayfirat