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Fix: FlyteDirectory fails for multiple files with the same name - #3325

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mys007 wants to merge 4 commits into
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mys007:fix-upload-rel-filenames2
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Fix: FlyteDirectory fails for multiple files with the same name#3325
mys007 wants to merge 4 commits into
flyteorg:masterfrom
mys007:fix-upload-rel-filenames2

fix 'is not in the subpath of' errors in integration tests

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