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@mthang mthang commented Oct 14, 2025

@bebatut
This "Preprocessing for Group Assignment and Co-Assembly Workflow" section is created as part of the Assembly of metagenomic sequencing data tutorial for FAIRyMAGs Hybrid Hackathon 2025: Optimising Metagenomics Assembled Genomes building.

The changes are made based on this workflow https://github.com/usegalaxy-eu/FAIRyMAGs/blob/main/Workflows/Group-Co-assembly.md.

  • added metadata table
  • create a collection using the paired-end dataset from the Assembly of metagenomic sequencing data tutorial
  • unzip the collection
  • Tag the forward and reverse dataset collection with the information defined in the metadata table
  • create a zip collection using the Tag collection (i.e forward and reverse end)
  • Apply rules to the zip collection to reorganize the collection based on group information defined in the metadata table
  • Concatenate the collection by stand

TODO:

  • reviewing the newly created "Preprocessing for Group Assignment and Co-Assembly Workflow" section is required

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