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Several fixes for snakefile and config#68

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Several fixes for snakefile and config#68
ZhaoxiangSimonCai wants to merge 2 commits into
gavinha:masterfrom
ZhaoxiangSimonCai:master

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https://github.com/Olimon660/TitanCNA/blob/master/scripts/R_scripts/titanCNA.R#L111

in titanCNA.R it looks for paste0(libdir, "/R/plotting.R")
removing the extra /R/ here to avoid confusion.

@ZhaoxiangSimonCai ZhaoxiangSimonCai changed the title fix the default path in config.yaml for titan script Several fixes for snakefile and config Feb 13, 2019
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