Initial commit

.gitignore

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+gdcm-win7

NiDBUploader.pro

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+#-------------------------------------------------
+#
+# Project created by QtCreator 2014-04-16T12:57:27
+#
+#-------------------------------------------------
+
+QT += core gui
+QT += network
+QT += testlib
+
+greaterThan(QT_MAJOR_VERSION, 4): QT += widgets
+
+TARGET = NiDBUploader
+TEMPLATE = app
+
+#CONFIG += static
+#CONFIG += staticlib
+
+SOURCES += main.cpp\
+        mainwindow.cpp \
+        anonymize.cpp
+
+HEADERS  += mainwindow.h \
+         anonymize.h
+
+FORMS    += mainwindow.ui
+
+#win32 {
+#DEFINES += BUILDTIME=\\\"$$system('echo %time%')\\\"
+#DEFINES += BUILDDATE=\\\"$$system('echo %date%')\\\"
+#} else {
+#DEFINES += BUILDTIME=\\\"$$system(date '+%H:%M.%s')\\\"
+#DEFINES += BUILDDATE=\\\"$$system(date '+%d/%m/%y')\\\"
+#}
+
+INCLUDEPATH += $$PWD/gdcm/Source/Attribute
+INCLUDEPATH += $$PWD/gdcm/Source/Common
+INCLUDEPATH += $$PWD/gdcm/Source/DataDictionary
+INCLUDEPATH += $$PWD/gdcm/Source/DataStructureAndEncodingDefinition
+INCLUDEPATH += $$PWD/gdcm/Source/InformationObjectDefinition
+INCLUDEPATH += $$PWD/gdcm/Source/MediaStorageAndFileFormat
+INCLUDEPATH += $$PWD/gdcm/Source/MessageExchangeDefinition
+INCLUDEPATH += $$PWD/gdcm-win7/Source/Common # for gdcmConfigure.h
+
+#win32-msvc*:contains(QMAKE_TARGET.arch, x86_64):{
+#    win32:CONFIG(release, debug|release): LIBS += -L$$PWD/min-gdcm64-win7/bin/Release/
+#    else:win32:CONFIG(debug, debug|release): LIBS += -L$$PWD/min-gdcm64-win7/bin/Debug/
+#}
+#else {
+    win32-msvc2010: {
+        LIBS += -LC:\Qt5\5.3\msvc2010_opengl\plugins\platforms
+
+        LIBS += -L$$PWD/min-gdcm32-win7/bin/Debug/
+        LIBS += -lopengl32 -limm32 -lwinmm -lWs2_32 -lQt5PlatformSupport
+    }
+    else {
+        linux-g++: {
+            LIBS += -L$$PWD/gdcm-centos7/bin
+        }
+        else {
+            win32:CONFIG(release, debug|release): LIBS += -L$$PWD/gdcm-win7/bin/Release/
+            else:win32:CONFIG(debug, debug|release): LIBS += -L$$PWD/gdcm-win7/bin/Debug/
+        }
+    }
+#}
+
+LIBS += -lgdcmMSFF \
+    -lgdcmCommon \
+    -lgdcmDICT \
+    -lgdcmDSED \
+    -lgdcmIOD \
+    -lgdcmMEXD \
+    -lgdcmcharls \
+    -lgdcmexpat \
+    -lgdcmjpeg12 \
+    -lgdcmjpeg16 \
+    -lgdcmjpeg8 \
+    -lgdcmopenjpeg \
+    -lgdcmzlib \
+#    -lgdcmgetopt \
+    -lsocketxx
+

NiDBUploader.sh

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+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:.
+./NiDBUploader

README.md

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+nidb-uploader
+=============
+
+NiDBUploader

anonymize.cpp

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+#include "anonymize.h"
+#include "gdcmReader.h"
+#include "gdcmImageReader.h"
+#include "gdcmImageWriter.h"
+#include "gdcmCSAHeader.h"
+#include "gdcmAttribute.h"
+#include "gdcmPrivateTag.h"
+
+Anonymize::Anonymize()
+{
+}

anonymize.h

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+#ifndef ANONYMIZE_H
+#define ANONYMIZE_H
+
+class Anonymize
+{
+public:
+    Anonymize();
+};
+
+#endif // ANONYMIZE_H

gdcm/AUTHORS

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+GDCM 2.x:
+--------
+
+           Fabrice Bellet            : Contributor (RPM)
+          Charl P. Botha             : Contributor (Python, VTK)
+             Shane Blackett          : Contributor (Win32)
+             Niels Dekker            : Contributor (C++ guru)
+        Daniele E. Domenichelli      : Contributor (C++)
+              Dean Inglis            : Contributor (Win32, VTK)
+    Paulo Henrique Junqueira Amorim  : Contributor (Python)
+            Pierre Le Duff           : Contributor (C++, VTK)
+           Mathieu Malaterre         : Project leader, main developer
+              Lars Matthaus          : Contributor (Java)
+              Sean McBride           : Contributor (C++)
+          Steve M. Robbins           : Contributor (debian)
+              Mark Roden             : Developer (C++, C#)
+             Jordi Romera            : Developer (C++, RTSTRUCT)
+       Jean-Pierre Roux              : Developer, maintain gdcmDataExtra
+         Christina Rossmanith        : Contributor (Siemens CSA)
+     Christopher W Treml             : Contributor (C#)
+              Joel Spaltenstein      : Developer (MacOSX)
+
+
+GDCM 1.x (Developpers and contributors, alphabetical order)
+--------
+              Aris Basic
+           Fabrice Bellet
+            Hugues Benoit-Cattin
+          Francois Bertel
+              Eric Boix
+          Charl P. Botha
+             Peter Cech
+   Eduardo Enrique Davila Serrano
+           Antonin Descampe
+             David Feng
+             Marco Feuerstein
+            Pierre Fillard
+   Leonardo Flores Valencia
+            Dennis Hu
+              Luis Ibanez
+            Michal Kurgan
+            Gianni Lazzarato
+            George Li
+              Sean McInemey
+             Johan Montagnat
+          Emmanuel Olart
+              Luca Picello
+         Parikshit Prasad
+            Benoit Regrain
+       Jean-Michel Rouet
+           Olivier Stern
+            Satomi Takeo

gdcm/Applications/CMakeLists.txt

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+subdirs(Cxx)

gdcm/Applications/Cxx/CMakeLists.txt

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+# Build the GDCM applications
+# Namely:
+# gdcmdump
+# gdcminfo
+# gdcmconv
+# gdcmanon
+
+
+if(WIN32 AND NOT CYGWIN)
+  include_directories(
+    "${GDCM_SOURCE_DIR}/Utilities/getopt"
+  )
+endif()
+
+# Add the include paths
+include_directories(
+  "${GDCM_BINARY_DIR}/Source/Common"
+  "${GDCM_SOURCE_DIR}/Source/Common"
+  "${GDCM_SOURCE_DIR}/Source/DataStructureAndEncodingDefinition"
+  "${GDCM_SOURCE_DIR}/Source/MediaStorageAndFileFormat"
+  "${GDCM_SOURCE_DIR}/Source/InformationObjectDefinition"
+  "${GDCM_SOURCE_DIR}/Source/MessageExchangeDefinition"
+# FIXME:
+  "${GDCM_SOURCE_DIR}/Source/DataDictionary"
+  "${GDCM_SOURCE_DIR}/Utilities"
+
+  )
+
+if(NOT GDCM_USE_SYSTEM_SOCKETXX)
+  include_directories(
+    "${GDCM_SOURCE_DIR}/Utilities/socketxx"
+    "${GDCM_SOURCE_DIR}/Utilities/socketxx/socket++" # local.h
+    "${GDCM_BINARY_DIR}/Utilities/socketxx/socket++" # config.h
+    )
+endif()
+
+if(WIN32)
+  if (BUILD_SHARED_LIBS)
+    add_definitions(-DGETOPT_DLL)
+  endif ()
+endif()
+
+set(GDCM_EXECUTABLE_NAME
+  gdcmdump
+  gdcmdiff
+  gdcmraw
+  gdcmscanner
+  gdcmanon
+  gdcmgendir
+  #gdcmoverlay
+  gdcmimg
+  #deflate
+  gdcmconv
+  #gdcmstream
+  gdcmtar
+  gdcminfo
+  gdcmscu
+  gdcmxml
+  gdcmpap3
+  )
+# poppler people have the worse API backward compatibility I know of.
+# there is absolutely no way to check the version of poppler
+# they change the API during a minor change of the version
+if(GDCM_USE_SYSTEM_POPPLER)
+  include(CheckCXXSourceCompiles)
+  set(CMAKE_REQUIRED_INCLUDES ${POPPLER_INCLUDE_DIRS})
+  set(CMAKE_REQUIRED_LIBRARIES ${POPPLER_LIBRARIES})
+  CHECK_CXX_SOURCE_COMPILES(
+    "\#include <poppler/GlobalParams.h>\nint main() { globalParams = new GlobalParams(0); return 0;}"
+    LIBPOPPLER_GLOBALPARAMS_CSTOR_HAS_PARAM)
+  set(libpoppler_flags)
+  if(LIBPOPPLER_GLOBALPARAMS_CSTOR_HAS_PARAM)
+    list(APPEND libpoppler_flags -DLIBPOPPLER_GLOBALPARAMS_CSTOR_HAS_PARAM)
+  endif()
+  CHECK_CXX_SOURCE_COMPILES(
+    "\#include <poppler/PDFDoc.h>\nint main() { PDFDoc d((GooString*)NULL,(GooString*)NULL,(GooString*)NULL); d.getPDFVersion(); return 0;}"
+    LIBPOPPLER_PDFDOC_HAS_PDFVERSION)
+  if(LIBPOPPLER_PDFDOC_HAS_PDFVERSION)
+    list(APPEND libpoppler_flags -DLIBPOPPLER_PDFDOC_HAS_PDFVERSION)
+  endif()
+  if(libpoppler_flags)
+    set_source_files_properties(
+      ${CMAKE_CURRENT_SOURCE_DIR}/gdcminfo.cxx
+      PROPERTIES COMPILE_FLAGS ${libpoppler_flags})
+    set_source_files_properties(
+      ${CMAKE_CURRENT_SOURCE_DIR}/gdcmpdf.cxx
+      PROPERTIES COMPILE_FLAGS ${libpoppler_flags})
+  endif()
+  include_directories(${POPPLER_INCLUDE_DIRS})
+  set(GDCM_EXECUTABLE_NAME
+    ${GDCM_EXECUTABLE_NAME}
+    gdcmpdf
+  )
+endif()
+
+if(GDCM_USE_SYSTEM_LIBXML2)
+  include_directories(${LIBXML2_INCLUDE_DIR})
+endif()
+
+if(GDCM_USE_SYSTEM_OPENJPEG)
+  include_directories(${OPENJPEG_INCLUDE_DIRS} )
+else()
+  include_directories(
+  "${GDCM_BINARY_DIR}/Utilities/gdcmopenjpeg"
+    )
+endif()
+
+if(NOT BUILD_SHARED_LIBS)
+  set_source_files_properties(gdcmstream.cxx
+                              PROPERTIES
+                              COMPILE_FLAGS -DOPJ_STATIC
+                              )
+endif()
+
+if(GDCM_USE_SYSTEM_PAPYRUS3)
+  include_directories(
+    ${PAPYRUS3_INCLUDE_DIRS}
+    )
+endif()
+
+foreach(exename ${GDCM_EXECUTABLE_NAME})
+  if(${exename} STREQUAL "gdcminfo")
+    add_executable(${exename} ${exename}.cxx puff.c)
+  else()
+    add_executable(${exename} ${exename}.cxx)
+  endif()
+  target_link_libraries(${exename} gdcmMSFF)
+  if(${exename} STREQUAL "gdcmpdf")
+    target_link_libraries(${exename} ${POPPLER_LIBRARIES})
+  elseif(${exename} STREQUAL "gdcmxml")
+    target_link_libraries(${exename} ${LIBXML2_LIBRARIES})
+  elseif(${exename} STREQUAL "gdcmscu")
+    if(NOT GDCM_USE_SYSTEM_SOCKETXX)
+      target_link_libraries(${exename} gdcmMEXD socketxx)
+    else()
+      target_link_libraries(${exename} gdcmMEXD socket++)
+    endif()
+  elseif(${exename} STREQUAL "gdcmstream")
+    target_link_libraries(${exename} ${GDCM_OPENJPEG_LIBRARIES})
+  elseif(${exename} STREQUAL "gdcminfo")
+    if(GDCM_USE_SYSTEM_POPPLER)
+      target_link_libraries(${exename} ${POPPLER_LIBRARIES})
+    endif()
+  endif()
+  if(GDCM_EXECUTABLE_PROPERTIES)
+    set_target_properties(${exename} PROPERTIES ${GDCM_EXECUTABLE_PROPERTIES})
+  endif()
+  if(WIN32 AND NOT CYGWIN)
+    target_link_libraries(${exename} gdcmgetopt)
+  endif()
+  if(NOT GDCM_INSTALL_NO_RUNTIME)
+    install(TARGETS ${exename}
+      EXPORT ${GDCM_TARGETS_NAME}
+      RUNTIME DESTINATION ${GDCM_INSTALL_BIN_DIR} COMPONENT Applications
+    )
+  endif()
+endforeach()
+
+if(GDCM_USE_SYSTEM_PAPYRUS3)
+  target_link_libraries(gdcmpap3 ${PAPYRUS3_LIBRARIES})
+endif()
+
+#if(BUILD_TESTING)
+#  if(GDCM_DATA_ROOT)
+#    file(MAKE_DIRECTORY ${GDCM_TEMP_DIRECTORY}/gdcmanon-gdcmdata)
+#    add_test(gdcmanon-gdcmdata ${EXECUTABLE_OUTPUT_PATH}/gdcmanon
+#      --continue  # skip LIBIDO-16-ACR_NEMA-Volume.dcm
+#      --certificate ${GDCM_SOURCE_DIR}/Testing/Source/Data/certificate.pem
+#      ${GDCM_DATA_ROOT}
+#      ${GDCM_TEMP_DIRECTORY}/gdcmanon-gdcmdata
+#      )
+#  endif()
+#endif()
+
+if(BUILD_TESTING)
+  # http://www.na-mic.org/Wiki/index.php/CTSC:ARRA:Mockup
+  # http://www.dicomserver.co.uk/
+  # the NAMIC server is offline, Steve Pieper has volunteered his servers, but they are intermittent
+  # IP Address: common.bwh.harvard.edu (155.52.248.49)
+  # Port: 11112
+  # AE Title: CTK_AE
+  # and
+  # IP Address: joe.bwh.harvard.edu (155.52.248.50)
+  # Port: 5678
+  # AE Title: CONQUESTSRV1
+  #since these servers have no guaranteed uptime, these tests should be changed to some other, known-to-be-up server
+  #add_test(gdcmscu-echo-CONQUEST ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --echo --call CONQUESTSRV1 joe.bwh.harvard.edu 5678)
+  add_test(NAME gdcmscu-echo-dicomserver COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --echo www.dicomserver.co.uk 11112)
+  if(GDCM_DATA_ROOT)
+    # CR-MONO1-10-chest.dcm gets rejected by www.dicomserver.co.uk:
+    # Tag 0x0,0x902 reported as Incorrect VM (1) - Minimum value is 2 : 'Array of N Elements' (error 42752)
+    # CR-MONO1-10-chest.dcm gets rejected by mi2b2.slicer.org
+    # Tag 0x0,0x902 reported as Acceptance of objects without Patient ID is disabled (error 43264)
+    #add_test(gdcmscu-store-CONQUEST ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --store --call CONQUESTSRV1 joe.bwh.harvard.edu 11112 ${GDCM_DATA_ROOT}/SIEMENS_MAGNETOM-12-MONO2-FileSeq1.dcm)
+    add_test(NAME gdcmscu-store-dicomserver COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --store www.dicomserver.co.uk 11112 ${GDCM_DATA_ROOT}/SIEMENS_MAGNETOM-12-MONO2-FileSeq1.dcm)
+  endif()
+  #add_test(gdcmscu-find-CONQUEST ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --find --patient --call CONQUESTSRV1 joe.bwh.harvard.edu 11112 --patientroot -k 10,10=X*)
+  add_test(NAME gdcmscu-find-dicomserver COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --find --patient www.dicomserver.co.uk 11112 --patientroot -k 10,20=*)
+
+  if(GDCM_DICOM_SERVER_AETITLE)
+  if(GDCM_DATA_ROOT)
+    # Let's C-STORE a limited subset of gdcmData for now:
+    set(CSTORE_DATA_FILES
+      CR-MONO1-10-chest.dcm # Implicit VR Little Endian: Default Transfer Syntax for DICOM
+      012345.002.050.dcm    # JPEG Lossless, Non-Hierarchical, First-Order Prediction
+      )
+    foreach(cstorefile ${CSTORE_DATA_FILES})
+    add_test(NAME gdcmscu-echo-${cstorefile} COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --echo  --aetitle ${GDCM_DICOM_CLIENT_AETITLE} --call ${GDCM_DICOM_SERVER_AETITLE} ${GDCM_DICOM_SERVER_PEER} ${GDCM_DICOM_SERVER_PORT})
+    add_test(NAME gdcmscu-store-${cstorefile} COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --store --aetitle ${GDCM_DICOM_CLIENT_AETITLE} --call ${GDCM_DICOM_SERVER_AETITLE} ${GDCM_DICOM_SERVER_PEER} ${GDCM_DICOM_SERVER_PORT} ${GDCM_DATA_ROOT}/${cstorefile})
+    add_test(NAME gdcmscu-find-${cstorefile} COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --find --patient --aetitle ${GDCM_DICOM_CLIENT_AETITLE} --call ${GDCM_DICOM_SERVER_AETITLE} ${GDCM_DICOM_SERVER_PEER} ${GDCM_DICOM_SERVER_PORT} --patientroot -k 10,10=A* -k 10,20)
+    add_test(NAME gdcmscu-move1-${cstorefile} COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --move  --patient --aetitle ${GDCM_DICOM_CLIENT_AETITLE} --call ${GDCM_DICOM_SERVER_AETITLE} ${GDCM_DICOM_SERVER_PEER} ${GDCM_DICOM_SERVER_PORT} -o ${CMAKE_CURRENT_BINARY_DIR} --patientroot -k 10,10=Anonymized --port-scp ${GDCM_DICOM_CLIENT_PORT})
+    add_test(NAME gdcmscu-move2-${cstorefile} COMMAND ${EXECUTABLE_OUTPUT_PATH}/gdcmscu --move  --patient --aetitle ${GDCM_DICOM_CLIENT_AETITLE} --call ${GDCM_DICOM_SERVER_AETITLE} ${GDCM_DICOM_SERVER_PEER} ${GDCM_DICOM_SERVER_PORT} -o ${CMAKE_CURRENT_BINARY_DIR} --patientroot -k 10,10=X* --port-scp ${GDCM_DICOM_CLIENT_PORT})
+    endforeach()
+  endif()
+  endif()
+
+endif()