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tobiasrausch committed Jul 31, 2019
1 parent 99e4d53 commit a014687
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10 changes: 10 additions & 0 deletions AUTHORS
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Tracy: Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Tracy Project Authors:

Tobias Rausch <[email protected]>

Contributors:

Markus Hsi-Yang Fritz
Andreas Untergasser
698 changes: 24 additions & 674 deletions LICENSE
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21 changes: 0 additions & 21 deletions src/abif.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef ABIF_H
#define ABIF_H

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21 changes: 0 additions & 21 deletions src/align.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef ALIGN_H
#define ALIGN_H

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21 changes: 0 additions & 21 deletions src/assemble.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef ASSEMBLE_H
#define ASSEMBLE_H

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21 changes: 0 additions & 21 deletions src/decompose.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef DECOMPOSE_H
#define DECOMPOSE_H

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21 changes: 0 additions & 21 deletions src/fasta.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef FASTA_H
#define FASTA_H

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21 changes: 0 additions & 21 deletions src/fmindex.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef FMINDEX_H
#define FMINDEX_H

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21 changes: 0 additions & 21 deletions src/gotoh.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef GOTOH_H
#define GOTOH_H

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21 changes: 0 additions & 21 deletions src/index.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef INDEX_H
#define INDEX_H

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21 changes: 0 additions & 21 deletions src/indigo.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef INDIGO_H
#define INDIGO_H

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21 changes: 0 additions & 21 deletions src/json.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef JSON_H
#define JSON_H

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21 changes: 0 additions & 21 deletions src/msa.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef MSA_H
#define MSA_H

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21 changes: 0 additions & 21 deletions src/needle.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef NEEDLE_H
#define NEEDLE_H

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21 changes: 0 additions & 21 deletions src/profile.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef PROFILE_H
#define PROFILE_H

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21 changes: 0 additions & 21 deletions src/sage.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef SAGE_H
#define SAGE_H

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21 changes: 0 additions & 21 deletions src/scf.h
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/*
============================================================================
Tracy: Trace File Handling
============================================================================
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
============================================================================
Contact: Tobias Rausch ([email protected])
============================================================================
*/

#ifndef SCF_H
#define SCF_H

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