Merge dev/14.4.0 into feature/unitconv-per-species-category

This merge brings the dev/14.4.0 branch as of PR #2246 (Update volcano
emissions through 2023, by @msulprizio).  This is necesary in order to
include various updates and bug fixes from the 14.3.1 release.

Signed-off-by: Bob Yantosca <[email protected]>

CHANGELOG.md

@@ -8,14 +8,15 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 ### Added
 - Added `SpcConc%Units` for species-specific unit conversion
 - Diel and day-of-week scale factors for CEDS global base emissions
-- `allSpeciesInDryMixingRatio` routine in `calc_met_mod.F90`, to check if all species are in dry MR units before calling AIRQNT with `update_mixing_ratio=.TRUE.`
 - `Input_Opt%Satellite_CH4_Columns` logical flag; Set this to true if any of AIRS, GOSAT, TCCON observational operators are selected
 
 ### Changed
 - Updated routines in `GeosUtil/unitconv_mod.F90` for species-specific unit conversion
 - Halt timers during calls to `Convert_Spc_Units` so as to time unit conversions separately
 - Streamline `IF` statements for CH4 observational operators in `Interfaces/GCClassic/main.F90`
 - Disable parallel loop in `Do_Convection` when using TOMAS; it causes unit conversion issues.  Revisit later.
+- Add explicit handling of gravitational settling and hygroscopic growth in dry deposition
+- Added CO2, CO, and OCS single-tracer carbon simulations to the integration tests
 
 ### Fixed
 - Corrected the formula for 1st order heterogeneous chemical loss on stratospheric aerosol for NO2, NO3, and VOC.
@@ -24,17 +25,73 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 - Switch from fixed to monthly timezones, which account for daylight savings time more accurately when computing emissions
 - Updated NOAA GMD surface CH4 boundary conditions through 2022
 - Rename `NITs_Jscale_JHNO3` to `NITs_Jscale` and `NIT_Jscale_JHNO2` to `NIT_Jscale` in `geoschem_config.yml` templates
-- Updated volcano emissions from GMAO v202005 product to v202302 which extends to the end of 2022
+- Updated volcano emissions from GMAO v202005 product to v202401 which extends to the end of 2024
 - Use local scale height and level thickness to determine the PBL to determine the PBL top level and PBL pressure thickness
+- Update drydep mean diameters of aerosols to account for size distribution
 
 ### Fixed
+- Corrected the formula for 1st order heterogeneous chemical loss on stratospheric aerosol for NO2, NO3, and VOC.
 - Use rate-law function `GCARR_ac` for rxns that have Arrhenius `B` parameters that are zero
 - Now use correct index `WEAEROSOL(I,J,L,2+NDUST)` in routine `Settle_Strat_Aer` of `GeosCore/ucx_mod.F90`
 - Now get density of BCPI species from the species database in `ucx_mod.F90`
+- Fix issues that prevented single-species carbon simulations from running in GCHP
+- Update `HEMCO_Config.rc.carbon` and `ExtData.rc.carbon` templates for consistency
+- Updated several emissions files for CO and CH4 for COARDS and MAPL compliance
+- Fixed several issues in GCHP single-species carbon simulation setup scripts
 
 ### Removed
 - Legacy binary punch diagnostic code contained within `#ifdef BPCH_DIAG` blocks
 - `IU_BPCH` logical file unit (in `GeosUtil/file_mod.F90`)
+- Removed tagged CH4 and CO species handling from `carbon_gases_mod.F90`
+
+## [14.3.1] - 2024-04-02
+### Added
+- Added operational run scripts for the Imperial College London (ICL) cluster
+- Added new vertical region option to budget diagnostic for fixed bottom and top levels
+- Added GEOS-IT processed lat-lon fields as a valid option when creating GCHP run directories
+- Functions `charArr2str` and `str2CharArr` in `Headers/charpak_mod.F90`
+- Field `State_Diag%Obspack_CharArray` as a 2-D character array
+- Added util folder in run/CESM to include .cdl file used to generate CESM NetCDF input file for deposition
+- Add GCClassic operational example environment files for Harvard Cannon
+- Added new GCHP history collections for advection diagnostics
+- Added slash in front of names of LUT files read into `photolysis_mod.F90` to avoid needing it in path
+
+### Changed
+- Updated Harvard Cannon operational run scripts to use `huce_cascade` instead of `huce_intel`; also added `sapphire`
+- Changed exponent 'e' to 'd' for one entry in KPP to prevent precision error in external models
+- Changed GCHP sample run scripts to not print script execution commands to log
+- Changed offline emissions grid resolution templates in config files to be more descriptive
+- Read `obspack_id` from netCDF files into a character array, then convert to string
+- Add `#SBATCH -c 1` to GCHP integration test scripts and sample run scripts for Harvard Cannon
+- In GCC/GCHP integration tests, passing `-s none` will run compile-only tests.  Query user to proceed or to exit.
+- GCC/GCHP integration tests will exit immediately if `scheduler` is omitted.
+- Now use `raw` instead of `native` in GCHP run directory scripts & templates
+- Rename env var `RUNDIR_METLIGHTNING_DIR_NATIVE` to `RUNDIR_METLIGHTNING_DIR`
+- Rename env var `RUNDIR_METLIGHTNING_NATIVE_RES` to `RUNDIR_METLIGHTNING_RES`
+- Updated config files used in CESM from GEOS-Chem 14.1 to 14.3
+- Don't create run directories for integration/parallel tests if invoked with `-t compile`
+- Refactor integration and parallel test scripts to reduce the number of input arguments
+- Copy utility scripts that allow you to resubmit failed to integration and parallel test root directories
+- Update GCHP operational example environment files for Harvard Cannon
+- Do not run GCClassic integration test compile jobs in the background
+- Updated integration tests to pass quick option to compile scripts
+- Removed emissions handling from `global_ch4_mod.F90` and `carbon_gases_mod.F90` and instead apply scale factors to emissions directly in `HEMCO_Config.rc`
+- Loop over advected species CH4 chemistry routines to allow for multiple CH4 tracers within analytical inversion framework
+- Updated CH4 global anthropogenic emission inventory from EDGARv7 to EDGARv8
+
+### Fixed
+- Fixed unit conversions in GEOS-only code
+- Fixed GEOS-IT native lat-lon filenames used for clusters other than discover
+- Fixed offline emission paths set when using GEOS-IT meteorology
+- Fixed format issue in input_mod RRTMG print statement caught by some compilers
+- Fixed GEOS-IT SLP and TROPP scaling in pre-processed files used in GCHP
+- Fixed reading of NEI emissions through HEMCO
+- Fixed incorrect units metadata for `State_Met%PHIS`
+- Fixed bug in transport tracer ST80 mask criteria which prevented mask from ever being zero
+
+### Removed
+- Removed MPI broadcasts in CESM-only photolysis code; will read on all cores
+- Removed State_Chm%CH4_EMIS
 
 ## [14.3.0] - 2024-02-07
 ### Added