META-Gen Visualization Tool

This tool is designed to visualize dataset from the study of the effect of straw treatments on the microbial community in the soil. It is built using Streamlit, pandas, numpy, plotly, and matplotlib. Clustering and data transformation are done using pandas, numpy and k-prototypes algorithm.

The application is divided into sections:

1. Bacteria Data View
2. Bacteria Data Visualization charts
3. Fungi Data View
4. Fungi Data Visualization charts
5. Experimental visualization chart to visualize binary data

Running the App Locally

1. Clone the repository to your local machine.
2. Navigate to the project directory.
3. Create a virtual environment:

   python3 -m venv venv

4. Activate the virtual environment:
   • On Windows:

     .\venv\Scripts\activate

   • On Unix or MacOS:

     source venv/bin/activate

5. Install the required packages:

   pip install -r requirements.txt

6. Run the Streamlit app:

   streamlit run Home.py

Deployed Version

You can access the deployed version of the app at: Deployed App URL

Future work to be added:

• The graphs represnting the years distribution
• Add code snippets for explaining examples on data cleaning

Citation

If you use this tool in your research, please cite it as follows:

Abdelaal. (2024). META-Gen Visualization Tool (Version 1.0) [Software]. Zenodo. https://doi.org/10.5281/zenodo.10794898