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bugfix for #51 #54

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bugfix for #51 #54

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2 changes: 1 addition & 1 deletion degenotate_lib/vcf.py
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Original file line number Diff line number Diff line change
Expand Up @@ -172,7 +172,7 @@ def getVariants(globs, transcript, transcript_region, codons, extra_leading_nt,

## NOTE: Should we be comparing to ingroups with called genotypes here instead of number of all ingroups?

if not globs['count-fixed-alt-ingroups'] and len(in_hom_alts) == 1 and sum(in_hom_alts.values()) == globs['num-ingroups']:
if not globs['count-fixed-alt-ingroups'] and len(in_hom_alts) == 1 and sum(in_hom_alts.values()) == globs['num-ingroup-chr']:
pass;
# If we don't want to count fixed ingroups, check to see if any alt alleles are fixed and skip if so
else:
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