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Filter sparse QC samples before PLINK GRM#312

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tsackton merged 1 commit into
mainfrom
codex/fix-plink-grm-error
Apr 13, 2026
Merged

Filter sparse QC samples before PLINK GRM#312
tsackton merged 1 commit into
mainfrom
codex/fix-plink-grm-error

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Fixes a bug where some samples with lots of missing data would cause NaN value present in GRM errors in PLINK, by adding a genotype missingness filter that is applied before running PLINK in the QC module.

@tsackton tsackton merged commit 07df95b into main Apr 13, 2026
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@tsackton tsackton deleted the codex/fix-plink-grm-error branch April 13, 2026 21:24
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