Skip to content

Fix (some) coverage bed OOM errors#320

Merged
tsackton merged 2 commits into
mainfrom
codex/fix-coverage-oom
May 11, 2026
Merged

Fix (some) coverage bed OOM errors#320
tsackton merged 2 commits into
mainfrom
codex/fix-coverage-oom

Conversation

@tsackton
Copy link
Copy Markdown
Contributor

Some coverage bed runs fail due to OOMs arising from doing the bedtools sort / bedtools merge. This updates the zarr-to-bed script to do the merge itself to skip this step. Includes tests for equivalency between zarr-to-bed and bedtools merging.

@tsackton tsackton merged commit d516d4d into main May 11, 2026
13 checks passed
@tsackton tsackton deleted the codex/fix-coverage-oom branch May 20, 2026 20:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant