Skip to content

Add complexity-aware DB interval splitting#321

Merged
tsackton merged 2 commits into
mainfrom
codex/complexity-aware-db-intervals
May 14, 2026
Merged

Add complexity-aware DB interval splitting#321
tsackton merged 2 commits into
mainfrom
codex/complexity-aware-db-intervals

Conversation

@tsackton
Copy link
Copy Markdown
Contributor

This should address #314. It implements a configurable contig and interval cap for Genomics DB intervals, by default set to 200. It also implements an optional pre-variant-calling filter that removes contigs < a threshold from variant calling.

@tsackton tsackton merged commit b4e5ee0 into main May 14, 2026
13 checks passed
@tsackton tsackton deleted the codex/complexity-aware-db-intervals branch May 14, 2026 16:03
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant