Changing the DUG Data Model#393

Merged

YaphetKG merged 83 commits intoDugModel2.0from

data-model-update

Dec 19, 2025

Commits on Apr 15, 2025

Changing DugElement, DugConcept, adding DugVariable
Hina Shah
committed

Commits on Apr 23, 2025

Changing the HEAL parser
Hina Shah
committed

Commits on May 12, 2025

Changes to crawler
Hina Shah
committed
Adding study data type
Hina Shah
committed
Testing parser HEAL parser
Hina Shah
committed

Commits on Jun 3, 2025

ENH: Changing indexing, annotator
Hina Shah
committed
TEST: Fixing loader test
Hina Shah
committed

Commits on Jun 23, 2025

Making indexing work on one file
Hina Shah
committed

Commits on Jun 25, 2025

Correcting a few errors and cleanup
Hina Shah
committed
Make indices configurable through .env
Hina Shah
committed
Merge branch 'DugModel2.0' into data-model-update
Hina Shah
committed
Merge DugDataModel2.0
Hina Shah
committed
Updating indices to a dict
Hina Shah
committed
Cleaning print statements
Hina Shah
committed

Commits on Jun 26, 2025

Adjusting tests to code changes
Hina Shah
committed

Commits on Jun 27, 2025

FEAT: Adding a parser for HEAL studies to get data from MDS
Hina Shah
committed

Commits on Jun 29, 2025

Changes for studies annotation and index
Hina Shah
committed

Commits on Jul 9, 2025

Added /variables and /concepts endpoints that use new indexes
vladimir2217
committed

Commits on Jul 10, 2025

Commits on Jul 14, 2025

Updating HEAL Parser to get DugSections
Hina Shah
committed
Merge branch 'data-model-update' of github.com:helxplatform/dug into data-model-update
Hina Shah
committed
Adding Sections Index to the pipeline
Hina Shah
committed
CLEANUP
Hina Shah
committed

Commits on Jul 15, 2025

Fixed missing new model fields
vladimir2217
committed

Commits on Jul 16, 2025

Changing search to use index dictionary
Hina Shah
committed

Commits on Jul 24, 2025

Commits on Jul 25, 2025

Added comments to new APIs
vladimir2217
committed

Commits on Aug 6, 2025

Added cde endpoint. Added study_sources endpoint
vladimir2217
committed

Commits on Aug 11, 2025

Commits on Aug 12, 2025

Commits on Aug 26, 2025

Adding HEAL DDM2 parser, and its test
Hina Shah
committed
Merge branch 'data-model-update' of github.com:helxplatform/dug into data-model-update
Hina Shah
committed
Adding HEAL DDM2 parser, and its test
Hina Shah
committed

Commits on Aug 28, 2025

Commits on Sep 3, 2025

Commits on Sep 4, 2025

ENH: Change input element type to program name
Hina Shah
committed
Merge pull request #411 from helxplatform/add-program-name
YaphetKG
authored
revert identifier changes
Hina Shah
committed
Merging with remote
Hina Shah
committed

Commits on Sep 9, 2025

Commits on Sep 11, 2025

Ignoring elements that don't have an id
Hina Shah
committed

Commits on Sep 15, 2025

Adding parents to concepts
Hina Shah
committed
Removing is_standardized to match search API
Hina Shah
committed

Commits on Sep 16, 2025

Commits on Sep 17, 2025

Commits on Sep 24, 2025

Commits on Oct 27, 2025

Update Dockerfile and Makefile
Hina Shah
committed
Put back requirements for descriptions for concepts
Hina Shah
committed
Updating programs to enable endpoints
Hina Shah
committed

Commits on Nov 6, 2025

Update pydantic, and fix documentation page
Hina Shah
committed

Commits on Nov 20, 2025

Adding concept URLs to the new data model
Hina Shah
committed

Commits on Dec 8, 2025

CLEANUP andn FIX description population
Hina Shah
committed

Commits on Dec 11, 2025

CLEANUP, TESTS and BUG: Correcting index name retrieval
Hina Shah
committed
Merge branch 'data-model-update' of github.com:helxplatform/dug into data-model-update
Hina Shah
committed
FIX: return a string purl and not none
Hina Shah
committed
FIX index passing
Hina Shah
committed
Correcting tests
Hina Shah
committed