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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 766 158

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 293 47

Repositories

Showing 10 of 362 repositories
  • viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    hms-dbmi/viv’s past year of commit activity
    JavaScript 293 MIT 47 45 (1 issue needs help) 11 Updated Feb 1, 2025
  • pic-sure-public-datasets Public

    Public datasets available for PIC-SURE

    hms-dbmi/pic-sure-public-datasets’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Feb 1, 2025
  • vizarr Public

    A minimal Zarr image viewer based on Viv.

    hms-dbmi/vizarr’s past year of commit activity
    TypeScript 134 MIT 18 19 (1 issue needs help) 11 Updated Feb 1, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 5 Updated Jan 31, 2025
  • PIC-SURE-Metrics Public

    A Spring Boot PIC-SURE resource for logging user or service interactions for required metrics.

    hms-dbmi/PIC-SURE-Metrics’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Jan 31, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 0 Updated Jan 31, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    hms-dbmi/ETL-MissionControl-dbgap-submodule’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 31, 2025
  • cellpop Public
    hms-dbmi/cellpop’s past year of commit activity
    Jupyter Notebook 0 MIT 1 11 2 Updated Jan 31, 2025
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one’s past year of commit activity
    Shell 4 Apache-2.0 12 0 1 Updated Jan 31, 2025
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure’s past year of commit activity
    Java 5 Apache-2.0 3 0 6 Updated Jan 31, 2025
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