GitHub - hochwagenlab/General_HiSeq_Functions

#HiSeq_functions

This folder includes Perl, Python, and R functions used in the Hochwagen lab to analyze FASTQ files irrespective of data source.

Name		Name	Last commit message	Last commit date
Barcode_summary.pl		Barcode_summary.pl
Bootstrap_centromere.py		Bootstrap_centromere.py
ChromosomeWalk.py		ChromosomeWalk.py
Fastq_ReadExtract_byReadName.pl		Fastq_ReadExtract_byReadName.pl
Fastq_ReadExtract_bySeq.pl		Fastq_ReadExtract_bySeq.pl
Mappability.py		Mappability.py
Position_shift_SAM.pl		Position_shift_SAM.pl
README.md		README.md
Sam2Bedgraph.pbs		Sam2Bedgraph.pbs
SamToIGV.pbs		SamToIGV.pbs
fastqc.pbs		fastqc.pbs
rm_space_filename.py		rm_space_filename.py
vplot.py		vplot.py

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