feat(scripts): add script to get distinct CPIC lookup genes

hpi-dhc · Jan 15, 2024 · 54e1ea8 · 54e1ea8
1 parent 2f23784
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diff --git a/scripts/cpic_lookup_genes.py b/scripts/cpic_lookup_genes.py
@@ -0,0 +1,11 @@
+import json
+import requests
+
+cpicLookupUrl = "https://api.cpicpgx.org/v1/diplotype?select=genesymbol"
+response = requests.get(cpicLookupUrl)
+cpicLookups = response.json()
+genes = set()
+for lookup in cpicLookups:
+    genes.add(lookup['genesymbol'])
+for gene in genes:
+    print(gene)
diff --git a/scripts/requirements.txt b/scripts/requirements.txt
@@ -1,2 +1,3 @@
 pymongo==3.5.1
-pytest
+pytest
+requests