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HRA v2.4 #1952

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11adcae
Initial updates for HRA v2.4
bherr2 Nov 19, 2025
00cfce9
HRA Portal updates for 10th release (some data to be updated)
bherr2 Nov 19, 2025
aa602bd
Update CTA
bherr2 Nov 19, 2025
e643152
Update kg-explorer for staging/mirror sites (#1970)
edlu77 Dec 1, 2025
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2 changes: 1 addition & 1 deletion apps/ccf-eui/src/environments/environment.staging.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ export const environment = {
'https://data.sennetconsortium.org',
],
dbOptions: {
remoteApiEndpoint: 'https://apps.humanatlas.io/api',
remoteApiEndpoint: 'https://apps.humanatlas.io/api--staging',
},
customization: {
theme: 'hubmap',
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2 changes: 1 addition & 1 deletion apps/ccf-eui/src/environments/environment.ts
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Expand Up @@ -11,7 +11,7 @@ export const environment = {
'https://data.sennetconsortium.org',
],
dbOptions: {
remoteApiEndpoint: 'https://apps.humanatlas.io/api',
remoteApiEndpoint: 'https://apps.humanatlas.io/api--staging',
},
customization: {
theme: 'default',
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2 changes: 2 additions & 0 deletions apps/ccf-rui/src/app/core/store/icon-registry/default-icons.ts
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Expand Up @@ -30,6 +30,7 @@ export interface DefaultIconDefinition {
*/
export const DEFAULT_ICONS: DefaultIconDefinition[] = [
// Reference Organs
{ name: 'adipose', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-bladder.svg' },
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@bherr2 bherr2 Nov 19, 2025

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Waiting on organ icons for adipose and intervertebral disk

{ name: 'bladder', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-bladder.svg' },
{ name: 'blood', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-blood.svg' },
{ name: 'bone-marrow', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-bone-marrow.svg' },
Expand All @@ -44,6 +45,7 @@ export const DEFAULT_ICONS: DefaultIconDefinition[] = [
url: 'assets/icons/organ-icons/organ-icon-fallopian-tube-right.svg',
},
{ name: 'heart', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-heart.svg' },
{ name: 'intervertebral-disk', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-bladder.svg' },
{ name: 'kidney-left', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-kidney-left.svg' },
{ name: 'kidney-right', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-kidney-right.svg' },
{ name: 'kidneys', namespace: 'app', url: 'assets/icons/organ-icons/organ-icon-kidneys.svg' },
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4 changes: 2 additions & 2 deletions apps/ccf-rui/src/environments/environment.staging.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ export const environment = {
disableDbWorker: true,
dbOptions: {},
customization: {
collisionsEndpoint: 'https://apps.humanatlas.io/api/v1/collisions',
referenceData: 'https://apps.humanatlas.io/api/v1/rui-reference-data',
collisionsEndpoint: 'https://apps.humanatlas.io/api--staging/v1/collisions',
referenceData: 'https://apps.humanatlas.io/api--staging/v1/rui-reference-data',
},
skipUnsavedChangesConfirmation: false,
};
4 changes: 2 additions & 2 deletions apps/ccf-rui/src/environments/environment.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ export const environment = {
disableDbWorker: true,
dbOptions: {},
customization: {
collisionsEndpoint: 'https://apps.humanatlas.io/api/v1/collisions',
referenceData: 'https://apps.humanatlas.io/api/v1/rui-reference-data',
collisionsEndpoint: 'https://apps.humanatlas.io/api--staging/v1/collisions',
referenceData: 'https://apps.humanatlas.io/api--staging/v1/rui-reference-data',
},
skipUnsavedChangesConfirmation: true,
};
2 changes: 2 additions & 0 deletions apps/kg-explorer/src/app/utils/utils.ts
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Expand Up @@ -221,11 +221,13 @@ export const DO_INFO: Record<string, ObjectTypeData> = {
/** Maps UBERON id to the correct icon in the design system */
export const ORGAN_ICON_MAP: Record<string, string> = {
'http://purl.obolibrary.org/obo/UBERON_0004537': 'vasculature-thick', //blood vasculature
'http://purl.obolibrary.org/obo/UBERON_0014455': 'adipose',
'http://purl.obolibrary.org/obo/UBERON_0000955': 'brain',
'http://purl.obolibrary.org/obo/UBERON_0002182': 'extrapulmonary-bronchus',
'http://purl.obolibrary.org/obo/UBERON_0000970': 'eye',
'http://purl.obolibrary.org/obo/UBERON_0003889': 'fallopian-tube-left', //fallopian tube
'http://purl.obolibrary.org/obo/UBERON_0000948': 'heart',
'http://purl.obolibrary.org/obo/UBERON_0001066': 'intervertebral-disk',
'http://purl.obolibrary.org/obo/UBERON_0002113': 'kidneys', //kidney
'http://purl.obolibrary.org/obo/UBERON_0001465': 'knee',
'http://purl.obolibrary.org/obo/UBERON_0000059': 'large-intestine',
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14 changes: 14 additions & 0 deletions libs/ccf-shared/src/lib/services/organ-info/organ-info.service.ts
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Expand Up @@ -12,6 +12,13 @@ export const ALL_POSSIBLE_ORGANS = (
hasSex: true,
id: 'http://purl.obolibrary.org/obo/UBERON_0002097',
},
{
src: 'app:adipose',
organ: 'Adipose',
name: 'Adipose',
hasSex: true,
id: 'http://purl.obolibrary.org/obo/UBERON_0014455',
},
{
src: 'app:brain',
organ: 'Brain',
Expand Down Expand Up @@ -94,6 +101,13 @@ export const ALL_POSSIBLE_ORGANS = (
hasSex: true,
id: 'http://purl.obolibrary.org/obo/UBERON_0000948',
},
{
src: 'app:intervertebral-disk',
organ: 'Intervertebral Disk',
name: 'Intervertebral Disk',
hasSex: true,
id: 'http://purl.obolibrary.org/obo/UBERON_0001066',
},
{
disabled: true,
src: 'app:kidney-left',
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