Mherbold test branch

Examples/configs/data/loa_FS_baseline_v3.yaml

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+general:
+  conda environment: /global/homes/m/mherbold/.conda/envs/full_shape_bookkeeper
+  system: slurm_perlmutter
+  slurm args:
+    mail-type: fail
+    mail-user: herbold.9@osu.edu
+  defaults file: /global/cfs/cdirs/desi/science/lya/y3-fs/validation-tests/v1-1-0-0/configs/loa_fs_v4.yaml
+
+data:
+  bookkeeper dir: /global/cfs/cdirs/desi/science/lya/y3-fs/validation-tests/v1-1-0-0/baseline
+  healpix data: /global/cfs/cdirs/desi/spectro/redux/loa/healpix/
+  catalog: /global/cfs/cdirs/desi/users/martini/bal-catalogs/loa/QSO_cat_loa_main_dark_healpix_v3-altbal.fits
+
+
+delta extraction:
+  calib: 1
+  calib region: ciii
+  dla: /global/cfs/cdirs/desi/users/mwolfson/DLA_cat/gpp_251202_new_baseline.fits
+  bal: /global/cfs/cdirs/desi/users/martini/bal-catalogs/loa/QSO_cat_loa_main_dark_healpix_v3-altbal.fits
+  mask file: /global/cfs/cdirs/desi/science/lya/y3/loa/deltas/delta-lya-3-0/continuum_fitting_mask.txt
+
+correlations: {}
+
+fits: 
+  extra args:
+    smooth_covariance:
+      general:
+        correlation-types: auto auto cross cross    
+    vega_auto:
+      general:
+        model:
+          marginalize-below-rtmax: 16
+          marginalize-below-rpmax: 4
+    vega_cross:
+      general:
+        model:
+          marginalize-below-rtmax: 16
+          marginalize-below-rpmax: 4