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Merged
m-herbold merged 3 commits into from
Mar 5, 2026
Merged

Mherbold test branch #35

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078e696
Merge pull request #34 from igmhub/master
m-herbold Feb 3, 2026
f396f39
added command line argument for vega_mpi (sampler)
Mar 5, 2026
b3ae7f6
re-added init.py
Mar 5, 2026
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15 changes: 13 additions & 2 deletions picca_bookkeeper/bookkeeper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -3050,7 +3050,14 @@ def get_sampler_tasker(
section="fits",
command=command,
)


# pull sampler CLI flags from config
updated_extra_args = self.generate_extra_args(
config=self.config,
section="fits",
command=command,
)

slurm_header_args = {
"job-name": job_name,
"output": str(self.paths.fits_path / f"logs/{job_name}-%j.out"),
Expand All @@ -3068,9 +3075,13 @@ def get_sampler_tasker(
else:
environment = self.config["fits"]["sampler environment"]

base_command_args = {"": str(self.paths.fit_main_fname().resolve())}
command_args = DictUtils.merge_dicts(base_command_args, updated_extra_args)

return get_Tasker(updated_system)(
command=command,
command_args={"": str(self.paths.fit_main_fname().resolve())},
# command_args={"": str(self.paths.fit_main_fname().resolve())},
command_args=command_args,
packages=["vega"],
slurm_header_args=slurm_header_args,
environment=environment,
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