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@EpicGames @EASEA @neherlab @nextstrain @hodcroftlab @loculus-project @binarylandia @numrs

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  1. nextstrain/nextclade nextstrain/nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    Rust 261 67

  2. hodcroftlab/covariants hodcroftlab/covariants Public

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Python 325 110

  3. nextstrain/nextstrain.org nextstrain/nextstrain.org Public

    The Nextstrain website

    JavaScript 96 55