Improving Stage 1 Validity and Adding Utility Scripts #10
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Also added documentation
… to cases to be right Wrongly assumed case_lsit was a list of paths to cases when it shouldn't be
…lly load the labels Not doing the janky way where it only loads with the file exists. What if we want the file exist and it just so happens to not, but the loader loads the mask anyways?
PredictionDataset is for generating arrays for evaluation and ensembling
…and kidney tumor dices Doing so to check why my tk and tu dice for training are so low while training results report good tk and tu dice scores
…metrics_dict need to be the same length
since the albumentations version doesn't transpose mask
…e-fly sampling support again doing so bc gianmarco said that on the fly sampling is bueno and I think so too
…nTheFly and alphabetically sorted the imports
…y arg in io_params When `sample_on_the_fly=True`, the json loaded must be the `slice_indices_json_path` json
…to fetch the class to cleanly support the OnTheFly datasetss doing so to reduce repeat code in a readable way
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TestVoxelDatasetnow has the argumentload_labelskits19-2d-reproduce\scripts\utility\get_validation_predictions.py, for viewing validation predictions (to check potential disparities between validation and test performance)