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Functionality for deriving hierarchical scaffolds#5

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Jack-42 wants to merge 14 commits into
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scaffolds_update
Open

Functionality for deriving hierarchical scaffolds#5
Jack-42 wants to merge 14 commits into
masterfrom
scaffolds_update

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@Jack-42 Jack-42 commented May 21, 2024

This PR adds functionality by allowing for users to derive all unique scaffolds associated with input molecule(s), along with the corresponding distance/depth of each scaffold from its corresponding molecule(s). Below is an example image of the scaffolds/depths for a single molecule (Valium).

image

Note the usage of contains_ring to prevent non-scaffold fragments from being written to output. I can't attach example outputs (.tsv files) to this PR, but will send an email with an example case.

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