organized scripts into directories

jiawu · Jul 18, 2014 · 283e66f · 283e66f
1 parent 5f86882
commit 283e66f
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Showing 27 changed files with 5 additions and 3 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1 +1,3 @@
-.hg/
+build
+bin/*
+.DS_Store
diff --git a/Makeme b/Makeme
@@ -1,9 +1,9 @@
 CC=g++
 CFLAGS= -g -std=gnu++0x -I /home/jjw036/.local/include -L ~/.local/lib -I /software/boost/1.41.0/include/ -L /software/boost/1.41.0/lib/ -c
 LDFLAGS= -L /software/boost/1.41.0/lib/ -lboost_regex
-SOURCES=main.cpp SequenceGenerator.cpp
+SOURCES=./src/main.cpp ./src/SequenceGenerator.cpp
 OBJECTS=$(SOURCES:.cpp=.o)
-EXECUTABLE=seqGen
+EXECUTABLE=./bin/seqGen
 
 all: $(SOURCES) $(EXECUTABLE)
 

diff --git a/main.o b/main.o
diff --git a/CombinedFIMOParsed.R → scripts/CombinedFIMOParsed.R b/CombinedFIMOParsed.R → scripts/CombinedFIMOParsed.R
diff --git a/FIMOParserBPBv3longfiles_19_10.R → scripts/FIMOParserBPBv3longfiles_19_10.R b/FIMOParserBPBv3longfiles_19_10.R → scripts/FIMOParserBPBv3longfiles_19_10.R
diff --git a/SequenceGenerator.R → scripts/SequenceGenerator.R b/SequenceGenerator.R → scripts/SequenceGenerator.R
diff --git a/bpp-setup.sh → scripts/bpp-setup.sh b/bpp-setup.sh → scripts/bpp-setup.sh
diff --git a/delete_files.sh → scripts/delete_files.sh b/delete_files.sh → scripts/delete_files.sh
diff --git a/fimo_script.sh → scripts/fimo_script.sh b/fimo_script.sh → scripts/fimo_script.sh
diff --git a/main.R → scripts/main.R b/main.R → scripts/main.R
diff --git a/rename_file_lines.sh → scripts/rename_file_lines.sh b/rename_file_lines.sh → scripts/rename_file_lines.sh
diff --git a/run_script.sh → scripts/run_script.sh b/run_script.sh → scripts/run_script.sh
diff --git a/run_script2.sh → scripts/run_script2.sh b/run_script2.sh → scripts/run_script2.sh
diff --git a/run_script3.sh → scripts/run_script3.sh b/run_script3.sh → scripts/run_script3.sh
diff --git a/test2.sh → scripts/test2.sh b/test2.sh → scripts/test2.sh
diff --git a/test_q.sh → scripts/test_q.sh b/test_q.sh → scripts/test_q.sh
diff --git a/seqGen b/seqGen
diff --git a/ReporterSequence.h → src/ReporterSequence.h b/ReporterSequence.h → src/ReporterSequence.h
diff --git a/SequenceGenerator.cpp → src/SequenceGenerator.cpp b/SequenceGenerator.cpp → src/SequenceGenerator.cpp
diff --git a/SequenceGenerator.h → src/SequenceGenerator.h b/SequenceGenerator.h → src/SequenceGenerator.h
diff --git a/SequenceGenerator.o → src/SequenceGenerator.o b/SequenceGenerator.o → src/SequenceGenerator.o
diff --git a/main.cpp → src/main.cpp b/main.cpp → src/main.cpp
diff --git a/src/main.o b/src/main.o
diff --git a/test.cpp → src/test.cpp b/test.cpp → src/test.cpp
diff --git a/test.o b/test.o
diff --git a/mytest → test/mytest b/mytest → test/mytest
diff --git a/test → test/tests b/test → test/tests