Work around Nextflow issue with $PWD and Singularity #1
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A recent Nextflow change to how container entrypoints are managed is incompatible with adding -C to singularity.runOptions. Explicitly telling singularity to use the current working directory as the home directory inside the container fixes this.
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A recent Nextflow change to how container entrypoints are managed is incompatible with adding -C to singularity.runOptions. Explicitly telling singularity to use the current working directory as the home directory inside the container fixes this.