Changelog

Changelog

All notable changes to PhenoQC will be documented in this file.

[0.1.0] - 2024-10-18

Added

• Initial release of PhenoQC
• Data validation functionality:
  • Schema validation using JSON schema
  • Format compliance checks
  • Integrity verification
  • Duplicate record detection
  • Conflicting record identification
• Ontology mapping feature:
  • Support for multiple ontologies (HPO, DO, MPO)
  • Custom mapping support
  • Synonym resolution
• Missing data detection and imputation:
  • Multiple imputation strategies (mean, median, mode, KNN, MICE, SVD)
  • Option to flag records with missing data
• Batch processing capability:
  • Support for multiple file processing
  • Parallel execution
• Command-line interface (CLI)
• Streamlit-based graphical user interface (GUI)
• Reporting and visualization:
  • PDF and Markdown report generation
  • Visual summaries using Plotly
• Support for CSV, TSV, and JSON input files
• Recursive directory scanning option
• Comprehensive logging system
• YAML-based configuration for ontology mappings and imputation strategies

Changed

• Improved error handling and logging
• Updated documentation and examples

Fixed

• Resolved critical bugs related to data validation and ontology mapping