Features

PDB Manipulation Applications

---

• convert
  

• pdb2pov
  

• split
  

Code Tests

---

• algo_tests
  

Fragment Database Creation

---

• alignFrags
• makeFFrags
• makeRFrags

Loop Database Creation

---

• loopDbEven
• loopDbOdd

RNA Structure Assembly and Simulation

---

• assembleCons
• submitGenBuild
• confspace

Graph Analysis

---

• cluster2
• clusterSpace

Other

---

• dirmix
  

• findFeature
  

• fragstats
  

• fuzzyView
  

• genPDB
  

• genPairedStacked
  

• getAsym
  

• getBase
  

• getSpacePDB
  

• getmodel
  

• graph
  

• hydroType
  

• model
  

• monte
  

• nchoose
  

• path2pdb
  

• pdb2fuzzy
  

• pdb2fuzzySS
  

• pdb2path
  

• pdb_test
  

• pov.tt
  

• pvoro
  

• randmz
  

• region
  

• replace2Frag
  

• rms
  

• scoretable
  

• spheres2pov.pl
  

• submitBuild
  

• submitBuild_top
  

• submitGenBuild
  

• submitLoops
  

• threadSpace
  

• topN
  

• voro