Germline vcf substraction#59

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ramonamerong wants to merge 6 commits into

germline_vcf_substraction

Commits on Jun 9, 2022

Commits on Jun 14, 2022

Added improved insertion point determination and TSD info
ramonamerong
committed

Commits on Jun 15, 2022

Tweaked the VAF determination bounderies to better exclude TSD site
ramonamerong
committed

Commits on Jun 27, 2022

Added germline substraction via VCF predictions and BAM file. Also replaced getRightPredictionBorder with getEndRightPredictionBorder calls.
ramonamerong
committed

Commits on Dec 7, 2022

Updated documentation and last small changes
ramonamerong
committed