GitHub - knaughten/roms_tools: Python and Matlab scripts for pre- and post-processing of ROMS simulations

Python scripts for pre- and post-processing of ROMS simulations, and some interactive plotting routines. See file_guide.txt for descriptions of what they do and how to use them.

Created for the circumpolar Antarctic configuration of ROMS-CICE-MCT with a quarter-degree grid; should be easy to adapt to other domains.

Note: ipython is a much nicer python interpreter than plain python, if it's available on your system.

Name	Name	Last commit message	Last commit date
Latest commit Kaitlin Naughten Final commits from PhD stuff Nov 9, 2018 72cd0bd · Nov 9, 2018 History 138 Commits
.gitignore	.gitignore	Bunch of new things, comments and documentation coming soon	Jan 18, 2017
README.md	README.md	Added plotting scripts for mass loss error map and NSIDC sea ice comp…	Jun 20, 2016
add_tide_period.py	add_tide_period.py	Documentation! Finally!	Apr 4, 2017
adv_amery_tsplots.py	adv_amery_tsplots.py	Bug fixes and some new scripts for diagnosing sea ice weirdness	Jan 23, 2017
adv_frazil.py	adv_frazil.py	Miscellaneous updates	May 29, 2017
adv_freezingpt_slice.py	adv_freezingpt_slice.py	Miscellaneous updates	May 29, 2017
adv_mld.py	adv_mld.py	Miscellaneous updates	May 29, 2017
adv_mld_2.py	adv_mld_2.py	Comments and documentation	May 29, 2017
adv_polynyas.py	adv_polynyas.py	Miscellaneous updates	May 29, 2017
adv_ross_tsplots.py	adv_ross_tsplots.py	Miscellaneous updates	May 29, 2017
adv_sss.py	adv_sss.py	Miscellaneous updates	May 29, 2017
adv_thickness.py	adv_thickness.py	Miscellaneous updates	May 29, 2017
adv_thickness_2.py	adv_thickness_2.py	Comments and documentation	May 29, 2017
adv_timeseries_volume.py	adv_timeseries_volume.py	Bunch of new things, comments and documentation coming soon	Jan 18, 2017
adv_u3_sss_anom.py	adv_u3_sss_anom.py	Documentation! Finally!	Apr 4, 2017
aice_animation.py	aice_animation.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
aice_hi_seasonal.py	aice_hi_seasonal.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
avg_zeta.py	avg_zeta.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
bugs_acc_fig.py	bugs_acc_fig.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_convection_slices.py	bugs_convection_slices.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_dpt_fig.py	bugs_dpt_fig.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_drift_slices.py	bugs_drift_slices.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
bugs_mld_polynya.py	bugs_mld_polynya.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_tides_massloss.py	bugs_tides_massloss.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_timeseries_aice.py	bugs_timeseries_aice.py	Final scripts for first draft of thesis	Dec 18, 2017
bugs_ts_distribution.py	bugs_ts_distribution.py	Final scripts for first draft of thesis	Dec 18, 2017
bwsalt_plot.py	bwsalt_plot.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
bwtemp_plot.py	bwtemp_plot.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
calc_ice_prod.py	calc_ice_prod.py	Bug fix	Jul 11, 2018
calc_rx1.py	calc_rx1.py	Comments and documentation	May 29, 2017
calc_z.py	calc_z.py	Miscellaneous updates	May 29, 2017
cartesian_grid_2d.py	cartesian_grid_2d.py	Modularised calculations of dx, dy, dz, z into 2D and 3D functions ra…	Apr 28, 2016
cartesian_grid_3d.py	cartesian_grid_3d.py	Moved CMIP5 code to separate repository; added i-slice plots	Oct 11, 2016
cice_grid.py	cice_grid.py	Bunch of updates, documentation coming later	Mar 6, 2017
cice_ini.py	cice_ini.py	Documentation! Finally!	Apr 4, 2017
cice_vectorplot.py	cice_vectorplot.py	Bunch of updates, documentation coming later	Mar 6, 2017
circumpolar_cice_plot.py	circumpolar_cice_plot.py	I promise comments are coming soon	Apr 3, 2017
circumpolar_plot.py	circumpolar_plot.py	Bug fix	Jul 11, 2018
common_grid.py	common_grid.py	Updates to intercomparison figures	Sep 8, 2017
compare_nic_seasonal.py	compare_nic_seasonal.py	Miscellaneous updates	May 29, 2017
convert_era.job	convert_era.job	Documentation! Finally!	Apr 4, 2017
depoorter_data	depoorter_data	Updates to intercomparison figures	Sep 8, 2017
effective_thickness.py	effective_thickness.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
era_evap.job	era_evap.job	Documentation! Finally!	Apr 4, 2017
era_gpcp.py	era_gpcp.py	Documentation! Finally!	Apr 4, 2017
evap_era_monthly.py	evap_era_monthly.py	Documentation! Finally!	Apr 4, 2017
file_guide.txt	file_guide.txt	Tweaks to ice shelf figures	Aug 9, 2017
find_isolated_points.py	find_isolated_points.py	Final scripts for first draft of thesis	Dec 18, 2017
fix_isolated_points.py	fix_isolated_points.py	Comments and documentation	May 29, 2017
freezingpt_slice.py	freezingpt_slice.py	Miscellaneous updates	May 29, 2017
gadv_frazil_bathy.py	gadv_frazil_bathy.py	Miscellaneous updates	May 29, 2017
gadv_frazil_thickness.py	gadv_frazil_thickness.py	Miscellaneous updates	May 29, 2017
gadv_freezingpt_slice.py	gadv_freezingpt_slice.py	Miscellaneous updates	May 29, 2017
get_rms_tide_vel.m	get_rms_tide_vel.m	Added RMS tidal velocity code; added FESOM high-res to mip_grid_res.py	Jul 7, 2017
grid_res.py	grid_res.py	Bunch of updates, documentation coming later	Mar 6, 2017
h_circumpolar.py	h_circumpolar.py	Final scripts for first draft of thesis	Dec 18, 2017
holland_fig1.py	holland_fig1.py	Documentation! Finally!	Apr 4, 2017
i_slice.py	i_slice.py	Miscellaneous updates	May 29, 2017
ice2ocn_fwflux.py	ice2ocn_fwflux.py	Bug fixes and some new scripts for diagnosing sea ice weirdness	Jan 23, 2017
ice_drift_seasonal.py	ice_drift_seasonal.py	Bunch of updates, documentation coming later	Mar 6, 2017
iceberg_melt.py	iceberg_melt.py	Added flux correction calculation	Jun 2, 2017
ini_sss_circumpolar.py	ini_sss_circumpolar.py	Miscellaneous updates	May 29, 2017
ini_sst_circumpolar.py	ini_sst_circumpolar.py	Miscellaneous updates	May 29, 2017
interp_era2roms.py	interp_era2roms.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
interp_lon_roms.py	interp_lon_roms.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
interp_lon_sose.py	interp_lon_sose.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
ismr_map.py	ismr_map.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
ismr_plot.py	ismr_plot.py	Bug fix	Jul 11, 2018
make_density_file.py	make_density_file.py	Miscellaneous updates	May 29, 2017
make_zonal_slices.sh	make_zonal_slices.sh	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
massloss_map.py	massloss_map.py	Added intercomparison figures for timeseries and mass loss maps	Jun 14, 2017
max_vel.py	max_vel.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
mip_aice_minmax_nsidc.py	mip_aice_minmax_nsidc.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_calc_watermasses.py	mip_calc_watermasses.py	Water mass proportioning, plus minor changes	Sep 29, 2017
mip_cavity_fields.py	mip_cavity_fields.py	Ice shelf figures for intercomparison	Jul 14, 2017
mip_circumpolar_drift.py	mip_circumpolar_drift.py	Bug fix	Jul 11, 2018
mip_dpt_calc.py	mip_dpt_calc.py	Updates to intercomparison figures	Sep 8, 2017
mip_dpt_calc_annual.py	mip_dpt_calc_annual.py	Bug fix	Jul 11, 2018
mip_drift_slices.py	mip_drift_slices.py	Final scripts for first draft of thesis	Dec 18, 2017
mip_grid_res.py	mip_grid_res.py	Tweaks to ice shelf figures	Aug 9, 2017
mip_hi_seasonal.py	mip_hi_seasonal.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_iceshelf_figures.py	mip_iceshelf_figures.py	Bug fix	Jul 11, 2018
mip_last_jan.py	mip_last_jan.py	A few figure changes for intercomparison	Aug 22, 2017
mip_massloss_difference_map.py	mip_massloss_difference_map.py	More ocean and ice shelf figures for intercomparison	Jul 13, 2017
mip_massloss_error_map.py	mip_massloss_error_map.py	More ocean and ice shelf figures for intercomparison	Jul 13, 2017
mip_mld.py	mip_mld.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_regions_1var.py	mip_regions_1var.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_scatterplot.py	mip_scatterplot.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_seasonal_cycle.py	mip_seasonal_cycle.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_sfc_stress.py	mip_sfc_stress.py	Bug fix	Jul 11, 2018
mip_std_massloss.py	mip_std_massloss.py	Bug fix	Jul 11, 2018
mip_tamura_binning.py	mip_tamura_binning.py	Bug fix	Jul 11, 2018
mip_tamura_circumpolar_plot.py	mip_tamura_circumpolar_plot.py	Bug fix	Jul 11, 2018
mip_tamura_plot.py	mip_tamura_plot.py	Bug fix	Jul 11, 2018
mip_timeseries.py	mip_timeseries.py	A bunch of new intercomparison figures	Jun 26, 2017
mip_ts_distribution.py	mip_ts_distribution.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_ts_distribution_ecco2.py	mip_ts_distribution_ecco2.py	Bug fix	Jul 11, 2018
mip_ts_distribution_sose.py	mip_ts_distribution_sose.py	A few figure changes for intercomparison	Aug 22, 2017
mip_watermass_barchart.py	mip_watermass_barchart.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
mip_zonal_cavity_ts.py	mip_zonal_cavity_ts.py	Added comments to ice shelf figures	Aug 2, 2017
mld_plot.py	mld_plot.py	Fixed periodic boundary treatment and theta_s/theta_b mixup; added so…	Nov 10, 2016
monthly_avg_cice.py	monthly_avg_cice.py	Miscellaneous updates	May 29, 2017
monthly_avg_roms.py	monthly_avg_roms.py	Miscellaneous updates	May 29, 2017
nbdry_grid_hack.py	nbdry_grid_hack.py	Miscellaneous updates	May 29, 2017
nsidc_aice_monthly.py	nsidc_aice_monthly.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
nsidc_aice_seasonal.py	nsidc_aice_seasonal.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
other_models_data	other_models_data	Removed northern boundary sponge layer and periodic boundary overlap …	Aug 5, 2016
paul_holland_hack.py	paul_holland_hack.py	Documentation! Finally!	Apr 4, 2017
plot_kinetic_energy.py	plot_kinetic_energy.py	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
plot_layers.py	plot_layers.py	Comments and documentation	May 29, 2017
plot_maxspeed.py	plot_maxspeed.py	Added observations to plots of basal mass loss and area-averaged ice …	May 26, 2016
plot_volume.py	plot_volume.py	Added iceberg fluxes file and a few other small things	Aug 4, 2016
remove_cavities.py	remove_cavities.py	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
repeat_forcing.py	repeat_forcing.py	Documentation! Finally!	Apr 4, 2017
repeat_forcing_monthly.py	repeat_forcing_monthly.py	Documentation! Finally!	Apr 4, 2017
romscice_atm_monthly.py	romscice_atm_monthly.py	Documentation! Finally!	Apr 4, 2017
romscice_atm_subdaily.py	romscice_atm_subdaily.py	Miscellaneous updates	May 29, 2017
romscice_evap.py	romscice_evap.py	Documentation! Finally!	Apr 4, 2017
romscice_flux_correction.py	romscice_flux_correction.py	Added zoomed-in plots of melt rate fields for intercomparison	Jun 16, 2017
romscice_gpcp.py	romscice_gpcp.py	Documentation! Finally!	Apr 4, 2017
romscice_ini_ecco.py	romscice_ini_ecco.py	Miscellaneous updates	May 29, 2017
romscice_ini_woa.py	romscice_ini_woa.py	Miscellaneous updates	May 29, 2017
romscice_nbc.py	romscice_nbc.py	Miscellaneous updates	May 29, 2017
romscice_nbc_rep.py	romscice_nbc_rep.py	Documentation! Finally!	Apr 4, 2017
romscice_nbc_zeta.py	romscice_nbc_zeta.py	Documentation! Finally!	Apr 4, 2017
romscice_sss_nudging.py	romscice_sss_nudging.py	Comments and documentation	May 29, 2017
romscice_tides.py	romscice_tides.py	Documentation! Finally!	Apr 4, 2017
rotate_vector_cice.py	rotate_vector_cice.py	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
rotate_vector_roms.py	rotate_vector_roms.py	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
seaice_budget.py	seaice_budget.py	Bug fixes and some new scripts for diagnosing sea ice weirdness	Jan 23, 2017
seaice_budget_thermo.py	seaice_budget_thermo.py	Bug fixes and some new scripts for diagnosing sea ice weirdness	Jan 23, 2017
seasonal_avg_cice.py	seasonal_avg_cice.py	Added zoomed-in plots of melt rate fields for intercomparison	Jun 16, 2017
seasonal_avg_roms.py	seasonal_avg_roms.py	Documentation! Finally!	Apr 4, 2017
seasonal_climatology_cice.py	seasonal_climatology_cice.py	Added seasonal climatology for CICE	Jun 21, 2017
seasonal_climatology_roms.py	seasonal_climatology_roms.py	Intercomparison ocean figures	Jul 11, 2017
slope_current.py	slope_current.py	Bug fix	Jul 11, 2018
sose_roms_seasonal.py	sose_roms_seasonal.py	Miscellaneous updates	May 29, 2017
sose_seasonal.py	sose_seasonal.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
ssflux_tamura_annual.py	ssflux_tamura_annual.py	Documentation! Finally!	Apr 4, 2017
ssflux_tamura_monthly.py	ssflux_tamura_monthly.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
ssflux_tamura_seasonal.py	ssflux_tamura_seasonal.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
temp_salt_seasonal.py	temp_salt_seasonal.py	Common code for monthly and seasonal averages; put common functions i…	Mar 15, 2017
temp_salt_slice.py	temp_salt_slice.py	Miscellaneous updates	May 29, 2017
timeseries_3D.py	timeseries_3D.py	Miscellaneous updates	May 29, 2017
timeseries_dpt.py	timeseries_dpt.py	Tweaks to ice shelf figures	Aug 9, 2017
timeseries_i2osalt.py	timeseries_i2osalt.py	Documentation! Finally!	Apr 4, 2017
timeseries_massloss.py	timeseries_massloss.py	Tweaks to ice shelf figures	Aug 9, 2017
timeseries_massloss_bellingshausen.py	timeseries_massloss_bellingshausen.py	Figures for intercomparison paper and bug chapter	Oct 25, 2017
timeseries_massloss_depth.py	timeseries_massloss_depth.py	A bunch of new intercomparison figures	Jun 26, 2017
timeseries_seaice.py	timeseries_seaice.py	Final scripts for first draft of thesis	Dec 18, 2017
timeseries_seaice_extent.py	timeseries_seaice_extent.py	A bunch of new intercomparison figures	Jun 26, 2017
timeseries_sss.py	timeseries_sss.py	Miscellaneous updates	May 29, 2017
total_iceshelf_area.py	total_iceshelf_area.py	Bug fix	Jul 11, 2018
unesco.py	unesco.py	Added density calculation routines	Dec 11, 2015
uv_vectorplot.py	uv_vectorplot.py	Bug fixes and some new scripts for diagnosing sea ice weirdness	Jan 23, 2017
uvp_grid_fix.py	uvp_grid_fix.py	Fixed vector rotation issue, fixed some grid issues, and a bunch of n…	Sep 15, 2016
woa_netcdf.py	woa_netcdf.py	Made initialisation files more modular	Nov 18, 2015
zice_circumpolar.py	zice_circumpolar.py	Water mass proportioning, plus minor changes	Sep 29, 2017
zonal_plot.py	zonal_plot.py	More ocean and ice shelf figures for intercomparison	Jul 13, 2017

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