2.0.1

What's Changed

• feat: napari 0.7 by @KRiedmiller in #557
• ci: test on release on all platforms, update actions by @KRiedmiller in #561
• docs: 2.0 release notes by @KRiedmiller in #562
• fix: multichannel export by @KRiedmiller in #565
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #564

Full Changelog: 2.0.0...2.0.1

2.0.0

What's Changed

• feat: stable release of Panseg 2.0

Older changes since last stable version (1.8.0)

• fix: links in docs, docstring warning and theme override by @qin-yu in #269
• fix(docs): teach Qt to find napari icons by @qin-yu in #271
• fix(installation): remove old configs if KeyError | macOS installation by @qin-yu in #277
• fixes PlantSeg crash on apple silicon #273 by @lorenzocerrone in #275
• check and free VRAM for prediction with oversized patch by @qin-yu in #272
• use RangeSlider to fix #278 | handle None image by @qin-yu in #279
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #284
• Unify and standardise logging in PlantSeg v2 by @qin-yu in #296
• Add important widgets and improve logger further by @qin-yu in #297
• PlantSeg.Core: ModelZoo, PlantSegImage, and VoxelSize by @qin-yu in #298
• Tests: Fix all existing tests by @qin-yu in #299
• Use Codecov by @qin-yu in #300
• Automatic patch shape recommendation by @qin-yu in #302
• Test and refactor .core and functionals.dataprocessing by @qin-yu in #303
• fix(widget-IO): temp fix #282 and auto generate layer name by @qin-yu in #304
• Properly refresh ComboBox choices with functions by @qin-yu in #305
• Compute best patch and halo shapes by default, reduce user effort by @qin-yu in #307
• Make VoxelSize iterable and array-like, remove .is_valid by @qin-yu in #310
• refactor: use magicgui.types.Separator by @qin-yu in #311
• Fix TIFF default layer name and hide key widget by @qin-yu in #312
• Fix size finder and widgets for 2D UNet by @qin-yu in #313
• Improve model filters | Use RadioButtons | Custom modality by @qin-yu in #314
• Group widgets for batch .hide()/.show() by @qin-yu in #317
• Fix and document distance transform watershed for 2D pmaps/images by @qin-yu in #318
• PlantSeg v2 docs base by @qin-yu in #320
• Recover and document over-/under-seg fix by nuclei by @qin-yu in #321
• PlantSeg v2: Finalise docs by @qin-yu in #322
• Add un-/re-do and save-/load-states for proofreading tool by @qin-yu in #323
• Document missing button issue by @qin-yu in #327
• Fix and integrate lifted multicut widget into agglomeration widget by @qin-yu in #328
• Refactor and recover widgets: cropping and label processing by @qin-yu in #330
• PlantSeg v2: Final polishment of GUI by @qin-yu in #326
• refactor(GUI): rename and reorder widgets for intuitive sequential flow by @qin-yu in #331
• PlantSeg v2: full codebase refactor with unified task framework, enhanced prediction/proofreading, and metadata handling by @lorenzocerrone in #285
• Fix version related issues: bump version, comparison and Anaconda upload by @qin-yu in #333
• fix h5 export by @lorenzocerrone in #335
• fix: avoid reading logo file from docs folder by @qin-yu in #336
• New export widget by @lorenzocerrone in #341
• Fix perfomance on mac by @lorenzocerrone in #337
• Fix voxel size unit by @qin-yu in #343
• fix (#344): update windows install instructions by @lorenzocerrone in #347
• Match conda recipe and include package_data logo by @qin-yu in #348
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #349
• fix: #353 by @lorenzocerrone in #354
• Proofreading improvements by @lorenzocerrone in #355
• Improved Headless + gui by @lorenzocerrone in #356
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #357
• fix: allow more runtime errors in find_batch_size() by @qin-yu in #359
• fix: allow but warn all runtime errors in 3D find_a_max_patch_shape() by @qin-yu in #361
• fix: widgets should have optional arg for updating other widgets by @qin-yu in #362
• fix(env): Pydantic v2.10 causes bioimageio.spec issues by @qin-yu in #363
• Fix and promote PlantSeg v1 installation by @qin-yu in #364
• ci(docs): fetch all git history/tags/branches for MkDocs dates by @qin-yu in #366
• Fix smart load | Make extension check case-insensitive by @qin-yu in #368
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #369
• Add image pair operation widget/task/functionals/docs by @qin-yu in #370
• Add inference API and task for all BioImage.IO Model Zoo models by @qin-yu in #338
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #378
• Fix anaconda_telemetry error in CI by @qin-yu in #382
• Add tests for and fix nuclei-assisted post-processing by @qin-yu in #381
• Fix Napari relared tests fails by @adambasha0 in #376
• Fix and test advanced prediction with 2D UNet by @qin-yu in #384
• Avoid BioImage.IO Core downloading everything from model zoo entries by @qin-yu in #386
• docs(proofreading): add simple tutorial for proofreading widget by @qin-yu in #387
• Use older ubuntu runner in CI by @qin-yu in #390
• refactor: algorithm and readability of patch size finder by @qin-yu in #388
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #391
• fix(ci): fix Found invalid version predicate in "DOC_RELEASE" by @qin-yu in #394
• CI/tests on pr by @KRiedmiller in #399
• build: pin xarray due to #396 by @qin-yu in #403
• Progress bar by @KRiedmiller in #397
• ci: add workflow for release by @KRiedmiller in #401
• style: uniform quotes, black compatibility by @KRiedmiller in #404
• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in #405
• ci: build installer by @KRiedmiller in #407
• fix: broken docs due to incompatible python 3.10 by @KRiedmiller in #408
• fix: dependencies by @KRiedmiller in #409
• add refresh button for keys in zarr/h5 files by @KRiedmiller in #402
• Better splash screen by @KRiedmiller in #411
• installer by @KRiedmiller in #412
• fix: unbound variable by @KRiedmiller in #413
• docs: remove outdated section by @KRiedmiller in #414
• fix: update version number shown in the installer by @KRiedmiller in #415
• docs: improve installation instructions by @KRiedmiller in #416
• fix: set prerelease on prereleases by @KRiedmiller in #420
• docs: fix typo by @KRiedmiller in #421
• fix: testing Cellpose data is moved to OSF by @qin-yu in #422
• fix(IO): update create_zarr() for zarr v3 by @qin-yu in #423
• Show removed instance for foreground filter API/task/widget by @qin-yu in #417
• ci: add commitlint workflow for PR title enforcement by @qin-yu in #424
• build: lift xarray and pydantic restrictions by @qin-yu in...

2.0.0rc18

What's Changed

• feat: export meshes from segmentations by @KRiedmiller in #530
• feat: automatic detection of input layout by @KRiedmiller in #531
• feat: invert axis during import by @KRiedmiller in #533
• fix: guard zmesh import by @KRiedmiller in #556

Full Changelog: 2.0.0rc17...2.0.0rc18

2.0.0rc17

What's Changed

• Update README by @KRiedmiller in #555

Full Changelog: 2.0.0rc15...2.0.0rc17

2.0.0rc15

What's Changed

• feat: export meshes from segmentations by @KRiedmiller in #530
• feat: automatic detection of input layout by @KRiedmiller in #531
• feat: invert axis by @KRiedmiller in #533
• fix: update model filter option after training by @KRiedmiller in #537
• fix: correct the choices in the workflow editor for mesh export by @KRiedmiller in #538
• fix: bbox offset by @KRiedmiller in #542
• fix: bigtiff export by @KRiedmiller in #549
• fix: pin versions by @KRiedmiller in #545
• test: io h5 and tiff by @KRiedmiller in #553
• refactor: rename in workflows by @KRiedmiller in #554

Full Changelog: 2.0.0rc10...2.0.0rc15

2.0.0rc14

What's Changed

• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in https://github.com/kreshuklab/plant-seg/pull/529
• feat: release 2.0 pop-up by @KRiedmiller in https://github.com/kreshuklab/plant-seg/pull/522

Full Changelog: kreshuklab/plant-seg@2.0.0rc13...2.0.0rc14

2.0.0rc13

What's Changed

• fix: bbox offset (#542) by @KRiedmiller in https://github.com/kreshuklab/plant-seg/pull/546

Full Changelog: kreshuklab/plant-seg@2.0.0rc12...2.0.0rc13

2.0.0rc12

What's Changed

• fix: rescaling during export by @KRiedmiller in https://github.com/kreshuklab/plant-seg/pull/528

Full Changelog: kreshuklab/plant-seg@2.0.0rc11...2.0.0rc12

2.0.0rc11

Full Changelog: kreshuklab/plant-seg@2.0.0rc10...2.0.0rc11

2.0.0rc10

What's Changed

• ci(pre-commit.ci): autoupdate by @pre-commit-ci[bot] in https://github.com/kreshuklab/plant-seg/pull/524
• fix: model downloads by @KRiedmiller in https://github.com/kreshuklab/plant-seg/pull/526

Full Changelog: kreshuklab/plant-seg@2.0.0rc9...2.0.0rc10